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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGAGCTTTTGCTATTGCTCAAGCACTCAAGTCTAATGATGATGTAGCTGTCACATCCCTAAACATTGGCAGTAACTTCCTAACAAAATTTGGGCAGgtgatgtattttatgctattgctataacttttgcttagttttacctctccttttattttattttcatggatctgaatatacttcaaattcag

Basic information

species Glycine max
transcript GLYMA02G03410.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03410.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv01s0026g00610.t01 (Vitis vinifera), 5'ss of exon 16
TGATGGAGCTTTTGCTATTGCTCAAGCACTCAAGTCTAATGATGATGTAGCTGTCACATCCCTAAACATTGGCAGTAACTTCCTAACAAAATTTGGGCAGgtgatgtattttatgctattgctataacttttgcttagttttacctctccttttattttattttcatggatctgaatatacttcaaattcag
||| || || ||||| |||||||||||||||||| ||||||| ||||| || ||||| || |||||| |||  || |||||||| ||||||||||| || || |  |  |||    | ||| | |  || ||  |    | ||   ||   | ||    | ||| |      || |                
TGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGACAAgtaaattccttttctgttttgtttttcctgtttgtagtgtatatagctatatataacaaactttaacttccatgcag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51342584|gb|CO983555.1|CO983555
EST:     CTGTCACATCCCTAAACATTGGCAGTAACTTCCTAACAAAATTTGGGCAG                         GGTGCTTTGGCTGATGCAAGAGACCATGTTTTGGAGATGACCGAAAAGGAA
genomic: CTGTCACATCCCTAAACATTGGCAGTAACTTCCTAACAAAATTTGGGCAGgtgatgtatt ... tcaaattcagGGTGCTTTGGCTGATGCAAGAGACCATGTTTTGGAGATGACCGAAAAGGAA
EST: gi|12772301|gb|BG237228.1|BG237228
EST:     CTGTCACATCCCTAAACATTGGCAGTAACTTCCTAACAAAATTTGGGCAG                         GGTGCTTTGGCTGATGCAAGAGACCATGTTTTGGAGATGACCGAAAAGGAA
genomic: CTGTCACATCCCTAAACATTGGCAGTAACTTCCTAACAAAATTTGGGCAGgtgatgtatt ... tcaaattcagGGTGCTTTGGCTGATGCAAGAGACCATGTTTTGGAGATGACCGAAAAGGAA