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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGGgtatgttactatgttttacatgttcaatatttttcagctgaatttgtttgattacttttctcaagatcgtttgatatggtatttggcttctttttatctc...

Basic information

species Glycine max
transcript GLYMA18G01710.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6726342|gb|AW310696.1|AW310696
EST:     GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG                         GTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
genomic: GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGGgtatgttact ... tttgtgctagGTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
EST: gi|19348792|gb|BM893324.1|BM893324
EST:     GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG                         GTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
genomic: GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGGgtatgttact ... tttgtgctagGTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
EST: gi|192319062|gb|FK010626.1|FK010626
EST:     GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG                         GTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
genomic: GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGGgtatgttact ... tttgtgctagGTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
EST: gi|208125922|gb|GD925978.1|GD925978
EST:     GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG                         GTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
genomic: GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGGgtatgttact ... tttgtgctagGTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
EST: gi|254315636|gb|GR825445.1|GR825445
EST:     GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG                         GTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
genomic: GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGGgtatgttact ... tttgtgctagGTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
EST: gi|254347136|gb|GR856806.1|GR856806
EST:     GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG                         GTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
genomic: GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGGgtatgttact ... tttgtgctagGTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
EST: gi|193385504|gb|FK349858.1|FK349858
EST:     GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG                         -TGAGGGAGCGGTGTAGAAAGGAGTGGACCA
genomic: GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGGgtatgttact ... tttgtgctagGTGAGGGAGCGGTGTAGAAAGGAGTGGACCA
EST: gi|192302164|gb|FG995816.1|FG995816
EST:     GGTGAATTTCAAACAGGGAAATCACGGTGGCAGGGG                         GTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGGGTCGGTTGGCA
genomic: GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGGgtatgttact ... tttgtgctagGTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA