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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGTAGGAAGAACACACATGAATGAGCAGTCGTCACGAAGTCACTTTGTCTTTACTTTGCGTATATCTGGGACTAATGAGgtactgaatttttcatacattggtatatttactgtttcttttatcttgacaccatttcctgatgtacttttctcttgctcatag

Basic information

species Glycine max
transcript GLYMA15G06880.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G06880.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv00s0532g00020.t01 (Vitis vinifera), 5'ss of exon 14
GTCTGTAGGAAGAACACACATGAATGAGCAGTCGTCACGAAGTCACTTTGTCTTTACTTTGCGTATATCTGGGACTAATGAGgtactgaatttttca----tacattggtatatt-tactgtttcttttatcttgacac---catttcctgatgtacttttctcttgctcatag------------
|||||| || |||||||| |||||||||||||| ||  |||||||||| || ||||| ||||| |||||||||   ||||||||||      || ||    ||||||  | || | | ||| | | |  ||     |||   ||    || ||  || | | |    | | | |            
GTCTGTTGGTAGAACACAAATGAATGAGCAGTCATCCAGAAGTCACTTGGTATTTACATTGCGAATATCTGGGGTAAATGAGgtacattcccttgcaatactacatttttgtactcttctgctacatacatgcgtgcacaaacaaacactcatccacatctgttgaccactttgttgatctgctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193720981|gb|FK661245.1|FK661245
EST:     TCTGGGACTAATGAG                         AACACTGACCAACAAGTGCAAGGTGTGTTAAGCCTGATTGATTTGGCTGGA
genomic: TCTGGGACTAATGAGgtactgaatt ... ttgctcatagAACACTGACCAACAAGTGCAAGGTGTGTTAAACCTGATTGATTTGGCTGGA
EST: gi|193717341|gb|FK655623.1|FK655623
EST:     TCTGGGACTAATGAG                         AACACTGACCAACAAGTGCAAGGTGTGTTAAGCCTGATTGATTTGGCTGGA
genomic: TCTGGGACTAATGAGgtactgaatt ... ttgctcatagAACACTGACCAACAAGTGCAAGGTGTGTTAAACCTGATTGATTTGGCTGGA
EST: gi|193526667|gb|FK485859.1|FK485859
EST:     CGTCACGAAGTCACTTTGTCTTTACTTTGCGTATATCTGGGACTAATGAG                         AACACTGACTAACAAGTGCAAGGTGTGTTAAACCTGATTGATTTGGCTGGA
genomic: CGTCACGAAGTCACTTTGTCTTTACTTTGCGTATATCTGGGACTAATGAGgtactgaatt ... ttgctcatagAACACTGACCAACAAGTGCAAGGTGTGTTAAACCTGATTGATTTGGCTGGA
EST: gi|193466181|gb|FK434192.1|FK434192
EST:     CGTCACGAAGTCACTTTGTCTTTACTTTGCGTATATCTGGGACTAATGAG                         AACACTGACCAACAAGTGCAAGGTGTGTTAAACCTGATTGATTTGGCTGGA
genomic: CGTCACGAAGTCACTTTGTCTTTACTTTGCGTATATCTGGGACTAATGAGgtactgaatt ... ttgctcatagAACACTGACCAACAAGTGCAAGGTGTGTTAAACCTGATTGATTTGGCTGGA
EST: gi|193317828|gb|FK283264.1|FK283264
EST:     CGTCACGAAGTCACTTTGTCTTTACTTTGCGTATATCTGGGACTAATGAG                         GACACTGACCAACAAGTGCAAGGTGTGTTAAACCTGATTGATTTGGCTGGA
genomic: CGTCACGAAGTCACTTTGTCTTTACTTTGCGTATATCTGGGACTAATGAGgtactgaatt ... ttgctcatagAACACTGACCAACAAGTGCAAGGTGTGTTAAACCTGATTGATTTGGCTGGA