1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TTCTCAAGCTGATTTGTACCATATTTTGATCTACATGTTCCTGAGCCCAACAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAGgttggttaacttccaacactcccttggcatctttttaaattttaattatgtatttctatatgaataatacttatgtgctctgttctgtttttaaccag
species | Glycine max |
transcript | GLYMA11G12120.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: AGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAAATCTGCAG CTTGTGCTTTTGCTTCTGGCTGEST: gi|193568385|gb|FK523476.1|FK523476
genomic: AGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAA-TCTGCAGgttggttaac ... ttttaaccagCTTGTGCTTTTGCTTCTGGCTG
EST: AGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATACTGCAG CTTGTGCTTTTGCTTCTGGCTGEST: gi|58021625|gb|CX708366.1|CX708366
genomic: AGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAAT-CTGCAGgttggttaac ... ttttaaccagCTTGTGCTTTTGCTTCTGGCTG
EST: CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAG CTTGTGCTTTTGCTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCAEST: gi|254323448|gb|GR840145.1|GR840145
genomic: CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAGgttggttaac ... ttttaaccagCTTGTGCTTTTGCTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCA
EST: CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAG CTTGTGCTTTTGCTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCAEST: gi|193571235|gb|FK529050.1|FK529050
genomic: CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAGgttggttaac ... ttttaaccagCTTGTGCTTTTGCTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCA
EST: CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAG CTTGTGCTTTTGCTTCTGGCTGEST: gi|207712323|gb|GD692793.1|GD692793
genomic: CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAGgttggttaac ... ttttaaccagCTTGTGCTTTTGCTTCTGGCTG
EST: CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAG CTTGTGCTTTTGCTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCAEST: gi|193534153|gb|FK488650.1|FK488650
genomic: CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAGgttggttaac ... ttttaaccagCTTGTGCTTTTGCTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCA
EST: CAACNCTTTGCTGGTCNGAAAAATACTGCAG CTTGTGCTTTTGCTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCEST: gi|193719056|gb|FK651304.1|FK651304
genomic: CAACTCTTTGCTGGTCAGAAAAAT-CTGCAGgttggttaac ... ttttaaccagCTTGTGCTTTTGCTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCC
EST: CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAG CTTGTGCTTTTGCTTCTGGCTGEST: gi|193633007|gb|FK580155.1|FK580155
genomic: CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAGgttggttaac ... ttttaaccagCTTGTGCTTTTGCTTCTGGCTG
EST: CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAG CTTGTGCTTTTGCTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTG
genomic: CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAGgttggttaac ... ttttaaccagCTTGTGCTTTTGCTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTCAAGCTGATTTGTACCATATTTTGATCTACATGTTCCTGAGCCCAACAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAGgttggttaacttccaacactcccttggcatctttttaaattttaattatgtatttctatatgaataatacttatgtgctctgttctgtttttaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG