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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGATTGATAGAATGGATTATAGCGGAGTAATGGAGCTTGTGTTTGATGTACAGTTCATGTTGAGGGGCGCAATGCATTTCTATGGATACTCATATGAGgtgaaatttcatatccgtgttactgcataaaatgatggaaacataccctgacttgttgtatttggaaaattaattggtgtcgaaagacaacatggcatac...

Basic information

species Glycine max
transcript GLYMA09G39380.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845438|gb|BF068557.1|BF068557
EST:     TACAGCTCATGTTGAGGGGCGCAATGCATTTCTATGGATACTCATATGAG                         GTAAGAACTGAAGCATGGAAGGTTCATGATCTCTTCTTTGATGTTTAGAAA
genomic: TACAGTTCATGTTGAGGGGCGCAATGCATTTCTATGGATACTCATATGAGgtgaaatttc ... ttatttgcagGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTCTTTGATATTTTGAAA
EST: gi|9439840|gb|BE440353.1|BE440353
EST:     TACAGTTCATGTTGAGGGGCGCAATGCATTTCTATGGATACTCATATGAG                         GTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTCTTTGATATTTTGAAA
genomic: TACAGTTCATGTTGAGGGGCGCAATGCATTTCTATGGATACTCATATGAGgtgaaatttc ... ttatttgcagGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTCTTTGATATTTTGAAA
EST: gi|151395857|gb|EV265734.1|EV265734
EST:     TACAGTTCATGTTGAGGGGCGTAATGCATTTCTATGGATACTCATATGAG                         GTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTCTTTGATATTTTGAAA
genomic: TACAGTTCATGTTGAGGGGCGCAATGCATTTCTATGGATACTCATATGAGgtgaaatttc ... ttatttgcagGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTCTTTGATATTTTGAAA