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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGAGTCCAACATTATATTCCTTAATCTCATATCTgtaagtgactaatgtcttagttcctctgtatctcttgctaattttctttttactgtgattaattctctcttgcttctttctttttattgtgtcgtttaaatggttttcatttgatcgctgctccttttcag

Basic information

species Glycine max
transcript GLYMA08G45270.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 14
GGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGAGTCCAACATTATATTCCTTAATCTCATATCTgtaagtgactaatgtcttagttcctctgtatctct-tgctaattttctttttactgtgattaattc--tctcttgcttctttctttttattgtgtcgtttaaa---tggttttcatttgatcgctgctccttttcag---------
||||||| ||||||||||| ||||||||||| ||| | ||||||||||| ||||||||||| ||||| || |||||||||||||||||    |   | | | ||| || |   | | | |   |   ||    | | | | |  | ||     | | ||| || || ||    ||   |  |  |    || | ||||| |    | |  ||  | | |          
GGAATTCAGCTGTTCAAGCTATTTCTTTACTGATACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCTgtaagcccatgtagcccttgttgctattcgtttttgtatcacacttgaactcattataaaaagtttgacttttggctgctctccttcccatggtccactggagctttgatattcatatagctg-taatctgtctaaatcttaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20811761|gb|BQ296239.1|BQ296239
EST:     TAAAAAAGGGTGTACCTGAGTCCAACATTATATTCCTTAATCTCATATCT                         GCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATA
genomic: TAAAAAAGGGTGTACCTGAGTCCAACATTATATTCCTTAATCTCATATCTgtaagtgact ... tccttttcagGCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATA
EST: gi|31311442|gb|CD396645.1|CD396645
EST:     TAAAAAAGGGTGTACCTGAGTCCAACATTATATTCCTTAATCTCATATCT                         GCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATA
genomic: TAAAAAAGGGTGTACCTGAGTCCAACATTATATTCCTTAATCTCATATCTgtaagtgact ... tccttttcagGCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATA
EST: gi|11412692|gb|BF424703.1|BF424703
EST:     GTCCAACATTATATTCCTTAATCTCATATCT                         GCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATA
genomic: GTCCAACATTATATTCCTTAATCTCATATCTgtaagtgact ... tccttttcagGCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATA
EST: gi|209716821|gb|BW654340.1|BW654340
EST:     TAAAAAAGGGTGTACCTGAGTCCAACATTATATTCCTTAATCTCATATCT                         GCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATA
genomic: TAAAAAAGGGTGTACCTGAGTCCAACATTATATTCCTTAATCTCATATCTgtaagtgact ... tccttttcagGCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATA
EST: gi|13240468|gb|BG359777.1|BG359777
EST:     TAAAAAAGGGTGTACCTGAGTCCAACATTATATTCCTTAATCTCATATCT                         GCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTNTCCAAGAATAAAGATA
genomic: TAAAAAAGGGTGTACCTGAGTCCAACATTATATTCCTTAATCTCATATCTgtaagtgact ... tccttttcagGCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATA