1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GCCAACATCAACGGATGCCATGGAAGTAGATGATAACTCAGCAACTCATGCTGCTGTCGGACCCACCCCTGAAAGgttggtcaattgccaattcctttctcgcagttttgttttcttatattcctgtctctgctctacctgtttctgacgtaaaataactttttattgacttgcag
species | Glycine max |
transcript | GLYMA08G08920.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GTAGATGATAACTCAGCAACTCATGCTGCTGTCGGACCCACCCCTGAAAG AAATGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCTEST: gi|193715157|gb|FK650238.1|FK650238
genomic: GTAGATGATAACTCAGCAACTCATGCTGCTGTCGGACCCACCCCTGAAAGgttggtcaat ... tgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
EST: CAACTCATGCTGCTGTCGGACCCACCCCTGAAAG AATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCTEST: gi|16341642|gb|BI967237.1|BI967237
genomic: CAACTCATGCTGCTGTCGGACCCACCCCTGAAAGgttggtcaat ... tgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
EST: GTAGATGATAACTCAGCAACTCATGCTGCTGTCGGACCCACCCCTGAAAG AATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCTEST: gi|208209884|gb|GE006409.1|GE006409
genomic: GTAGATGATAACTCAGCAACTCATGCTGCTGTCGGACCCACCCCTGAAAGgttggtcaat ... tgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
EST: TGCTGCTGTCGGACCCACCCCTGAAAG AATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCTEST: gi|208220916|gb|GE018052.1|GE018052
genomic: TGCTGCTGTCGGACCCACCCCTGAAAGgttggtcaat ... tgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
EST: TGCTGCTGTCGGACCCACCCCTGAAAG AATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCTEST: gi|193441761|gb|FK407726.1|FK407726
genomic: TGCTGCTGTCGGACCCACCCCTGAAAGgttggtcaat ... tgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
EST: GTAGATGATAACTCAGCAACTCATGCTGCTGTCGGACCCACCCCTGAAAG AATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
genomic: GTAGATGATAACTCAGCAACTCATGCTGCTGTCGGACCCACCCCTGAAAGgttggtcaat ... tgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAACATCAACGGATGCCATGGAAGTAGATGATAACTCAGCAACTCATGCTGCTGTCGGACCCACCCCTGAAAGgttggtcaattgccaattcctttctcgcagttttgttttcttatattcctgtctctgctctacctgtttctgacgtaaaataactttttattgacttgcag
- - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - GCTGCT