Sequence
atgc intronic sequence ATGC exonic sequenceTGTTAAACCAAGTTTGAGGCCGCTGTCTATGGCTATGTCTACTGTTGCTATTCATATCTTTGGAGATGTACCTTCCTCACCTCTTGTTGGACTTATGCAGgttagcttttttaagttgtattcattacaatttttaagtggaagtaattacttttccacaacatgatgaccagatttatagtctcctcaggttcaagggg...
Basic information
species | Glycine max |
transcript | GLYMA07G30370.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G30370.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os04g44430.1 (Oryza sativa), 5'ss of exon 12
TGTTAAACCAAGTTTGAGGCCGCTGTCTATGGCTATGTCTACTGTTGCTATTCATATCTTTGGAGATGTACCTTCCTCACCTCTTGTTGGACTTATGCAGgttagcttttttaagtt-gtattcattacaatttttaagtggaagta---attacttttccacaacatgatgaccagatttatagtctcctcaggttcaagggg
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TGTAAAACCAAGTTTGCGGCCATTATCAATGGCTATGTCAACTGTTGCAATCCATATATTTGGTGATGTGCCTTCTTCACCTCTTGTTGGGCTTCTTCAGgtaatgttgtttgtgtttgttcacacta-aatttgtaattttgaatattgaataattgtctaattgccgaatttcccatgaataaatccatttg-ttcattt--
upper sequence: GLYMA07G30370.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G64500.1 (Arabidopsis thaliana), 5'ss of exon 12
TGTTAAACCAAGTTTGAGGCCGCTGTCTATGGCTATGTCTACTGTTGCTATTCATATCTTTGGAGATGTACCTTCCTCACCTCTTGTTGGACTTATGCAGgttagcttttttaagttgtattcattacaatttttaagtggaag---taattacttttccacaacatgat-------gaccagatttatagtctcctcaggttcaagggg--------------------------------------------
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TGTCAAACCAAGTCTGAGACCACTTGCAATGGCGATGTCTACTGTCTCTATCCATATCTTTGGAGATGTACCTTCCTCACCACTCGTTGGAGTTCTTCAGgtttggtttctca-gctgtatccac-aaaattcttgattcagagctctaatgtcttaatcaaattaagcttcagttaaacgcgattattcatctagattagtttgagccatcactgtatccaacttcagaatgttttctcatttactcacgcag
upper sequence: GLYMA07G30370.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 11
TGTTAAACCAAGTTTGAGGCCGCTGTCTATGGCTATGTCTACTGTTGCTATTCATATCTTTGGAGATGTACCTTCCTCACCTCTTGTTGGACTTATGCAGgttagctttt----ttaagttgtattcattacaatttttaagtggaagtaattacttttccacaacatgatgaccagatttatagtctc--ctcaggttcaagggg
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TGTGAAACCAAGTTTGCGTCCGCTATCAATGGCTATGTCTACTGTTGCAATTCACATTTTTGGTGATGTTCCTTCCTCACCACTTGTTGGGGTTCTCCAGgtttgcctttccctttccctttctgtcagctagataatcctactaatgtttctagtttcccacatcatttatgtaaagaaaacagttctagcttagactc------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22934040|gb|BU551179.1|BU551179EST: TTCATATCTTTGGAGATGTACCTTCCTCACCTCTTGTTGGACTTATGCAG GATAAAATTAATAACTGGAGAACGACCGCATTGATTCTAACAACTATATTC
genomic: TTCATATCTTTGGAGATGTACCTTCCTCACCTCTTGTTGGACTTATGCAGgttagctttt ... gataatgcagGATAAAATTAATAACTGGAGAACGACCGCATTGATTCTAACAACTATATTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTAAACCAAGTTTGAGGCCGCTGTCTATGGCTATGTCTACTGTTGCTATTCATATCTTTGGAGATGTACCTTCCTCACCTCTTGTTGGACTTATGCAGgttagcttttttaagttgtattcattacaatttttaagtggaagtaattacttttccacaacatgatgaccagatttatagtctcctcaggttcaagggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG