Sequence
atgc intronic sequence ATGC exonic sequenceAAATCGATTTTTGGCTGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTgtaagttaattattttattgttggagagctatactctagaaatagtagttgcttgctaattgttgcctgatcttaaactttag
Basic information
species | Glycine max |
transcript | GLYMA07G03180.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G03180.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 15
AAATCGATTTTTGGCTGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCC---------Tgtaagttaattattttattgt----tggagagctatactctagaaatagt---agttgcttg-----ctaattgttgcctgatcttaaactttag
|||||||||||| ||||||||||| || ||||| ||||||||||| || |||| ||| | |||| ||||||| || || || || || |||||||| |||| || || || | | | | | ||| | | | | || | | || |||| | || | | | |||
---------TTTGGCTGCTGGCGATGATTTCTCTATTAAATTTTGGGATATGGACAACATTCAACTTCTAACAATCCTTGATGCGGAAGGAGGGCTTCCAGGGCTTCCTgtaagttgattaaattgaagtgaaatgtaagaaaacatttttaaaacaatgcaaatggcctaaatcattcatctttgcttt-tcatgatttctag
upper sequence: GLYMA07G03180.1 (Glycine max), 5'ss of exon 14
lower sequence: EFJ17248 (Selaginella moellendorffii), 5'ss of exon 15
AAATCGATTTTTGGCTGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTgtaagttaattattttattgttggagagctatactctagaaatagtagttgcttgctaattgttgcctgatcttaaactttag
||||| |||||||||||||| || || |||||||||||| | ||||||||||||||| || | |||||||| || | ||||| || | ||||| || ||||||| | | | || ||| ||||| ||| | | || |||| | || | | |
GAATCGGTTTTTGGCTGCTGGAGACGACTTCTCCATCAAAATATGGGATATGGATAATATTAATCTTTTGACGACGATAGATGCCGACAGTGGTCTTCCGgtaagttcttcaatagatcgtt---ctgctatcagctaaa-----ttcttccttgttctttctccacag--------------
upper sequence: GLYMA07G03180.1 (Glycine max), 5'ss of exon 14
lower sequence: EFJ30926 (Selaginella moellendorffii), 5'ss of exon 15
AAATCGATTTTTGGCTGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTgtaagttaattattttattgttggagagctatactctagaaatagtagttgcttgctaattgttgcctgatcttaaactttag
||||| |||||||||||||| || || |||||||||||| | ||||||||||||||| || | |||||||| || | ||||| || | ||||| || ||||||| | | | || ||| ||||| ||| | | || ||| | || | | |
GAATCGGTTTTTGGCTGCTGGAGACGACTTCTCCATCAAAATATGGGATATGGATAATATTAATCTTTTGACGACGATAGATGCCGACAGTGGTCTTCCGgtaagttcttcaatagatcgtt---ttgctatcagctaaa-----ttcttccttattctttctccacag--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8284131|gb|BE021690.1|BE021690EST: TGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCT GCAAGCCCGCGTATTCGCTTCAACAAGGATGGAACTCTTTTAGCTGTCTCT
genomic: TGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTgtaagttaat ... taaactttagGCAAGCCCGCGTATTCGCTTCAACAAGGATGGAACTCTTTTAGCTGTCTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAATCGATTTTTGGCTGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTgtaagttaattattttattgttggagagctatactctagaaatagtagttgcttgctaattgttgcctgatcttaaactttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT