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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGAACTAGAATCTATTATTGCATCGGAACTTTCTGATCCAGCTTGGCCAGCAGCACTATTGAATGATGTACTACTCACTTTGCATGCTCGTTTTAAGgtaaatggactttctcttgtgaatggaatatctgtgtgaaacatacttggatttgttcaataaagcattacctgaaggatgaggcaatgagcaaccaata...

Basic information

species Glycine max
transcript GLYMA05G36530.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36530.1 (Glycine max), 5'ss of exon 14
lower sequence: AT2G07360.2 (Arabidopsis thaliana), 5'ss of exon 15
TGATGAACTAGAATCTATTATTGCATCGGAACTTTCTGATCCAGCTTGGCCAGCAGCACTATTGAATGATGTACTACTCACTTTGCATGCTCGTTTTAAGgtaaatg-gactttctcttg-tgaatggaatatctgtgtgaaacatacttggatttgttcaataaagcattacctgaaggatgaggcaatgagcaaccaata-
 |||||  || |||| || ||||| ||||| ||||| ||||| | |||||| ||||| ||| | ||||||||  | || ||||||||||| || |||||||||| |  ||  || |||||     |   || |    ||| |   | |    | ||    | | |||||   |      | |    ||     | |  | || 
GGATGAGTTAAAATCAATCATTGCCTCGGAGCTTTCAGATCCTGGTTGGCCTGCAGCTCTAGTCAATGATGTTTTGCTTACTTTGCATGCCCGCTTTAAGgtaagtatgatgttttcttggcttttttgattttccagtgtagt-tgcgaacagtttcaaagttaagca--gctctgttgtttgtccacaatcctataagtat

upper sequence: GLYMA05G36530.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 15
TGATGAACTAGAATCTATTATTGCATCGGAACTTTCTGATCCAGCTTGGCCAGCAGCACTATTGAATGATGTACTACTCACTTTGCATGCTCGTTTTAAGgtaa-------atggactttctcttgtgaatggaatatctgtgtgaaacatacttggatttgttcaataaagcattacctgaaggatgaggcaatgagcaaccaata
||| |||||| | || ||||||||||| || |||||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||||||| |||||||         ||| |   |  |||   ||    | ||| |        |  |  |||| |   || || ||| |  |||    |  |    |  |         
TGACGAACTAAAGTCCATTATTGCATCAGAGCTTTCTGATCCAGCTTGGCCAGCAGCACTATTGAATGATGTCTTGCTCACATTGCATGCTCGTTTCAAGgtaacaacattgaggaataggttctgtttgtgttgaagctgcgcttctagcatctaaatttctattatgaaacataatttgaccattttgttcttctgtt-------

upper sequence: GLYMA05G36530.1 (Glycine max), 5'ss of exon 14
lower sequence: EFJ14965 (Selaginella moellendorffii), 5'ss of exon 9
TGATGAACTAGAATCTATTATTGCATCGGAACTTTCTGATCCAGCTTGGCCAGCAGCACTATTGAATGATGTACTACTCACTTTGCATGCTCGTTTTAAGgtaaatggactttctcttgtgaatggaatatctgtg-tgaaacatacttggatttgttcaataaagcattacctgaaggatgaggcaatgagcaaccaata
 || ||| || | ||||| || ||    || || ||||||||  | ||||| ||| | || |||| |||| |||||||||| |||||||||||||| ||||| |    |    || | |    | |||| | | ||        |     |                                                  
CGAGGAATTAAAGTCTATAATAGCGGGCGAGCTCTCTGATCCGTCATGGCCTGCATCGCTTTTGAGTGATATACTACTCACATTGCATGCTCGTTTCAAGgtgatccaaaga-ctttcggattttgaatttttctgaccggttgtttccag--------------------------------------------------

upper sequence: GLYMA05G36530.1 (Glycine max), 5'ss of exon 14
lower sequence: EFJ38257 (Selaginella moellendorffii), 5'ss of exon 9
TGATGAACTAGAATCTATTATTGCATCGGAACTTTCTGATCCAGCTTGGCCAGCAGCACTATTGAATGATGTACTACTCACTTTGCATGCTCGTTTTAAGgtaaatggactttctcttgtgaatggaatatctgtgtgaaacatacttggatttgttcaataaagcattacctgaaggatgaggcaatgagcaaccaata
 || ||| || | ||||| || ||    || || ||||||||  | ||||| ||| | || |||| |||| |||||||||| |||||||||||||| ||||| |    |      |||  | ||     || |   |||         || | | | ||                                         
CGAGGAATTAAAGTCTATAATAGCGGGCGAGCTCTCTGATCCGTCATGGCCTGCATCGCTTTTGAGTGATATACTACTCACATTGCATGCTCGTTTCAAGgttatccaaaga---ctttcggattttgcattttactga-------ccggttgtttccag----------------------------------------