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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAAAACAGAGACAATTGCGGGAAGTTCCCAATATTTTCTTTTGCACCTATGTACACAGgtattgtcttgtattatctcttacatatataaagtttcacagtgactgaatcttatggttttaagttttaacaccactaactttacagctccatgcccca...

Basic information

species Glycine max
transcript GLYMA14G39890.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G39890.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv18s0001g00500.t01 (Vitis vinifera), 5'ss of exon 13
GATGAAAACAGAGACAATTGCGGGAAGTTCCCAATATTTTCTTTTGCACCTATGTACACAGgtatt--gtcttgtattatctcttacatatataaagtttcacagtgactgaatcttatggttttaagttttaacacca---ctaactttacagctccatgcccca-----------------------------------------------------------------
||||||||  || |  ||||| || ||||| |||||||||||||||||||||||||| |||||| |   | ||| ||   || |  || ||||   | |  | | |||||  || ||   |||||| | || |  |      ||  ||  ||  ||    | || |                                                                 
GATGAAAATTGAAAAGATTGCTGGCAGTTCTCAATATTTTCTTTTGCACCTATGTACCCAGgtacttaattttgcatctgctttatcaaatattt-gctggatactgact--attttcgagttttatgcttaaggaaagaacctggctagactactttgagtcctatggttagccttttatgttcactttttggaattagtaaaatactaatggtgatattcaaaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51342518|gb|CO983503.1|CO983503
EST:     AGACAATTGCGGGAAGTTCCCAATATTTTCTTTTGCACCTATGTACACAG                         GCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCAT
genomic: AGACAATTGCGGGAAGTTCCCAATATTTTCTTTTGCACCTATGTACACAGgtattgtctt ... acttgtacagGCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCAT
EST: gi|58017398|gb|CX704140.1|CX704140
EST:     AGACAATTGCGGGAAGTTCCCAATATTTTCTTTTGCACCTATGTACACAG                         GCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCAT
genomic: AGACAATTGCGGGAAGTTCCCAATATTTTCTTTTGCACCTATGTACACAGgtattgtctt ... acttgtacagGCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCAT
EST: gi|208221094|gb|GE020764.1|GE020764
EST:     AGACAATTGCGGGAAGTTCCCAATATTTTCTTTTGCACCTATGTACACAG                         GCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCAT
genomic: AGACAATTGCGGGAAGTTCCCAATATTTTCTTTTGCACCTATGTACACAGgtattgtctt ... acttgtacagGCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCAT
EST: gi|58017203|gb|CX703945.1|CX703945
EST:     AGACAATTGCGGGAAGTTCCCAATATTTTCTTTTGCACCTATGTACACAG                         GCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCAT
genomic: AGACAATTGCGGGAAGTTCCCAATATTTTCTTTTGCACCTATGTACACAGgtattgtctt ... acttgtacagGCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCAT
EST: gi|163922935|gb|EH039556.1|EH039556
EST:     CGGGAAGTTCCCAATATTTTCTTTTGCACCTATGTACACAG                         GCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCAT
genomic: CGGGAAGTTCCCAATATTTTCTTTTGCACCTATGTACACAGgtattgtctt ... acttgtacagGCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCAT
EST: gi|51342063|gb|CO983330.1|CO983330
EST:     AGACAATTGCGGGAAGTTCCCAATATTTTCTTTTGCACCTATGTACACAG                         GCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCAT
genomic: AGACAATTGCGGGAAGTTCCCAATATTTTCTTTTGCACCTATGTACACAGgtattgtctt ... acttgtacagGCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCAT