Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGAGAATTGATGTTTTGGTATCAGATGAGGAGATGGAAGCACGCAGGAAAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatcttgaaactcatgaagaaaaaaaaagtatacataataattttatggagttctcgttacattttcttccatacttctttggtcctcctatttt...

Basic information

species Glycine max
transcript GLYMA13G27810.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208170379|gb|GD968858.1|GD968858
EST:     ATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: ATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|192320381|gb|FK013471.1|FK013471
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|208287305|gb|GE085697.1|GE085697
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATAGTAGACACCTGCTTACTAAGTGGATGCGTAAC
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAAT-GT-GACACCTGCTT-CTA-GTGGATGCGTAAC
EST: gi|193372700|gb|FK337484.1|FK337484
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|208090344|gb|GD885365.1|GD885365
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TNTATTAAAA-TGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|193308468|gb|FK274477.1|FK274477
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|208259599|gb|GE058439.1|GE058439
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|22927658|gb|BU544797.1|BU544797
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|193693174|gb|FK633751.1|FK633751
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGG
EST: gi|193557829|gb|FK513654.1|FK513654
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|193619039|gb|FK568389.1|FK568389
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|209708232|gb|BW678602.1|BW678602
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|193693181|gb|FK627192.1|FK627192
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|192320380|gb|FK013470.1|FK013470
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTTTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|193641941|gb|FK591129.1|FK591129
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|193687461|gb|FK633978.1|FK633978
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAG
EST: gi|151400516|gb|EV270330.1|EV270330
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGA
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGA
EST: gi|193595013|gb|FK547264.1|FK547264
EST:     CCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: CCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|26268415|gb|CA819478.1|CA819478
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|193634773|gb|FK584352.1|FK584352
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|208316375|gb|GE116621.1|GE116621
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAACGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|20813266|gb|BQ297744.1|BQ297744
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|208333428|gb|GE126193.1|GE126193
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|193469775|gb|FK438054.1|FK438054
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|151401192|gb|EV271006.1|EV271006
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|193474289|gb|FK440762.1|FK440762
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAA-TGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|193717508|gb|FK652878.1|FK652878
EST:     GTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: GTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|209715558|gb|BW682198.1|BW682198
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|193574319|gb|FK532002.1|FK532002
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
EST: gi|193489525|gb|FK455850.1|FK455850
EST:     AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAG                         TATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
genomic: AAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatct ... ctgcatccagTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAGGAGAATTGATGTTTTGGTATCAGATGAGGAGATGGAAGCACGCAGGAAAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGgtacatatcttgaaactcatgaagaaaaaaaaagtatacataataattttatggagttctcgttacattttcttccatacttctttggtcctcctatttt

- - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaaa