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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGAAAATGTCAATTCTTCTTGGAGTTGCTCAAATGAACCTTGGAATTGTGATGAGCTATTTCAATGCCATATTCTTTAGAAACAGCGTAAATGTGTGgtaagttaatcggtaatatttatggtaaaatcttactctcgaggatagaaaatagaaatagatggggggggggggggtagttttgtgcagttatttgcatctgcaatcaacaatcaaatcactgattctttctatcagaataaacttacatactaattcaacattaatgtacttttttattcaatgtttccctctcag

Basic information

species Glycine max
transcript GLYMA11G12120.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12120.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os03g14690.1 (Oryza sativa), 5'ss of exon 13
AAATGAAAATGTCAATTCTTCTTGGAGTTGCTCAAATGAACCTTGGAATTGTGATGAGCTATTTCAATGCCATATTCTTTAGAAACAGCGTAAATGTGTGgtaagttaatcggtaatatttatggtaaa-atcttactctcgaggatagaaaatagaaatagatggggggggggggggtagttttgtgcagttatttgcatctgcaatcaacaatcaaatcactgattctttctatcagaataaacttacatactaattcaacattaatgtacttttttattcaatgtttccctctcag
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || || || ||||| | |||||| || ||||| || ||||||||||||||| || |       |  || | ||   | |  | |  |  |    |  | || ||        |    |    |  | |  ||| | | | ||| | || ||                                                                                            
AGATGAAGATGTCAATTCTTCTTGGAGTTGCACAAATGAACCTTGGAATTGTGATTAGTTACTTTAATGCGAAATTCTTCAGGAACAGTGTTAATGTGTGgtaagtttattgtc-----tcgtgttgaatgcccttttatgtaacactctactttgagatgagattatgaccagattattctctattgctgctgtatgcttttgtaacag-----------------------------------------------------------------------------------------

upper sequence: GLYMA11G12120.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os10g10500.1 (Oryza sativa), 5'ss of exon 13
AAATGAAAATGTCAATTCTTCTTGGAGTTGCTCAAATGAACCTTGGAATTGTGATGAGCTATTTCAATGCCATATTCTTTAGAAACAGCGTAAATGTGTGgtaagttaatcggtaatatttatggtaaaatcttactctcgag--gatagaaaatagaaatagatggggggggggggggtagttttgtgcagttatttgcatctgcaatcaacaatcaaatcactgattctttctatcagaataaacttacatactaattcaacattaatgtacttttttattcaatgtttccctctcag
| |||||  |||| |||||| |||||||||| |||||||||||||||||  ||||||| || || || || |  || || |||||     | ||||| |||||||| |    | |   | ||||| || ||   |   | |||  |   || ||||  | || ||  |      |    |  ||| |  |  |||| |   | | |    |||| | |   || |   || |||  |     |  |  ||  ||  |                                           
AGATGAAGCTGTCTATTCTTATTGGAGTTGCACAAATGAACCTTGGAATAATGATGAGTTACTTTAACGCAAAGTTTTTCAGAAATGCTATTAATGTTTGgtaagtaa----gaatcttctatgg-aatatgccatgattgagttgtatgacaataagattacatatgatacatgatatttttttagaactattatattgttttacttaaaacagt-aggccatt--ctcattcagttg---tgtaactatgtaacag------------------------------------------

upper sequence: GLYMA11G12120.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G104418_T01 (Zea mays), 5'ss of exon 4
AAATGAAAATGTCAATTCTTCTTGGAGTTGCTCAAATGAACCTTGGAATTGTGATGAGCTATTTCAATGCCATATTCTTTAGAAACAGCGTAAATGTGTGgtaagttaatcggtaatatttatggtaaaatcttactctcgaggatagaaaatagaaatagatggggggggggggggtagttttgtgcagttatttgcatctgcaatcaacaatcaaatcactgattctttctatcagaataaacttacatactaattcaacattaatgtacttttttattcaatgtttccctctcag
| ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||| | ||| ||||| |||||  | ||||||||||||||| ||    |   ||||    | ||| | ||  || |   | || |  || | || |      | |  |  | |  | ||  |  |||   || | ||  |   |||| || || | ||||| || |   |  | |    | | | |                                              
AGATGAAGATGTCCATTCTTCTTGGAGTTGCACAAATGAACCTTGGGATTGTGATCAGCTACTTCAATGCAAAATTTTTTAGGAACAGTCTTAATGTGTGgtaagtttatt--caccttttagcagacaatttgacattccatttt-gagatgaggactacaacaatcgtgaagaagca--tgtgatcctttaacagcgt-tgttacagacaa-cagatta-tgatttttccacgcttactcctttgaaacag---------------------------------------------

upper sequence: GLYMA11G12120.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G058910_T01 (Zea mays), 5'ss of exon 13
AAATGAAAATGTCAATTCTTCTTGGAGTTGCTCAAATGAACCTTGGAATTGTGATGAGCTATTTCAATGCCATATTCTTTAGAAACAGCGTAAATGTGTGgtaagttaatcggtaatat---ttatggtaaaatcttactctcgaggatagaaaatagaaatagatggggggggggggggtagttttgtgcagttatttgcatctgcaatcaacaatcaaatcactgattctttctatcagaataaacttacatactaattcaacattaatgtacttttttattcaatgtttccctctcag
| ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||| || || |||||||| | ||| || || |||||  | ||||||||||||||| ||      | |   ||||   | ||| | ||  || |   |   |    ||  || |      | |  |  | |||  |   ||      ||  ||   |||||      | |  | || || ||||      | | |  | | | |                                              
AGATGAAGATGTCGATTCTTCTTGGAGTTGCACAAATGAACCTTGGGATTGTGATTAGTTACTTCAATGCAAAATTTTTCAGGAACAGTATTAATGTGTGgtaagtttattcaccttttattttatcagacaatatgacattccattttgtgacgaggatctacaacaattgtgaagaagcagtcctt--caacagcgtgtttc---aatca-----tatactattgtttttttcacatgtactcatttgaaacag---------------------------------------------

upper sequence: GLYMA11G12120.1 (Glycine max), 5'ss of exon 13
lower sequence: AT2G21410.1 (Arabidopsis thaliana), 5'ss of exon 13
AAATGAAAATGTCAATTCTTCTTGGAGTTGCTCAAATGAACCTTGGAATTGTGATGAGCTATTTCAATGCCATATTCTTTAGAAACAGCGTAAATGTGTGgtaagt---taatcggtaatatttatggtaaaatcttactctcgaggatagaaaatagaaatagatggggggggggggggtagttttgtgcagttatttgcatctgcaatcaacaatcaaatcactgattctttctatcagaataaacttacatactaattcaacattaatgtacttttttattcaatgtttccctctcag
| |||||||||||||||||| |||||||||| ||||||||||| |||||  | |||||||  || ||||| | |||||| | ||     |||||  | |||| |||    |||         || |  | |  |  | ||| |   | |    |||         | |   |        | |||                                                                                                                    
AGATGAAAATGTCAATTCTTATTGGAGTTGCACAAATGAACCTCGGAATCATAATGAGCTTCTTTAATGCAAAATTCTTCAAAAGTGCTGTAAACATATGgtgagtattcaattttctgcccttgtcattacgtacttctccca--gttcttcaattatctgcccttgtctgatctcacatggttccag----------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA11G12120.1 (Glycine max), 5'ss of exon 13
lower sequence: AT4G39080.1 (Arabidopsis thaliana), 5'ss of exon 13
AAATGAAAATGTCAATTCTTCTTGGAGTTGCTCAAATGAACCTTGGAATTGTGATGAGCTATTTCAATGCCATATTCTTTAGAAACAGCGTAAATGTGTGgtaagttaatcggtaatatttatggtaaaatcttactctcgaggatagaaaatag--aaatagatggggggggggggggtagttttgtgcagttatttgcatctgcaatcaacaatcaaatcactgattctttctatcagaataaacttacatactaattcaacattaatgtacttttttattcaatgtttccctctcag
| |||||||||||||| ||||| |||||| ||||||||||||| |||||  | |||||||| || ||||| | |||||| | |   || |||||| | ||||  ||| |   |  || ||| ||   | | | | |||||         |  |    ||| ||         |      |       |  | || |  |    ||||                                                                                             
AGATGAAAATGTCAATCCTTCTCGGAGTTTCTCAAATGAACCTCGGAATCATAATGAGCTACTTTAATGCTAGATTCTTCAAATCAAGTGTAAATATATGgtgggttcagttgatat-tttctgaccatagcgtgctctctctctctccagttccttaaacagtaaaaatcagtcatcatctcagcatctaattttgcgggcttgcag--------------------------------------------------------------------------------------------

upper sequence: GLYMA11G12120.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv03s0038g00290.t01 (Vitis vinifera), 5'ss of exon 13
AAATGAAAATGTCAATTCTTCTTGGAGTTGCTCAAATGAACCTTGGAATTGTGATGAGCTATTTCAATGCCATATTCTTTAGAAACAGCGTAAATGTGTGgtaagttaatcggtaatatttatggtaaaatcttactctcgaggatagaaaatagaaatagatggggggggggggggtagttttgtgcagttatttgcatctgcaatcaacaatcaaatcactgattctttctatcagaataaacttacatactaattcaacattaatgtacttttttattcaatgtttccctctcag
| |||||||||||||| ||| | || || || |||||||| ||||||||  |  |||||||||||||||||| |||||||   || ||| ||||| | |||| ||| |      |  |||| |   ||||| ||| |   |    |   ||        | | |        |    ||||  |    ||| ||||   | |  ||                                                                                            
AGATGAAAATGTCAATCCTTATAGGGGTGGCCCAAATGAATCTTGGAATCATATTGAGCTATTTCAATGCCAAATTCTTTCAGAATAGCCTAAATATATGgtgagtcagatataataatttttttaaaaattttattagagcatttttcaagctattgcaaa-gctatcatagaaaatagtagt---tagtcattt--ttttataa--------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207841102|gb|GD810609.1|GD810609
EST:     GTGATGAGCTATTTCAATGCCATATTCTTTAGAAACAGCGTAAATGTGTG                         GTTCCAGTTCATTCCCCAGATGATATTTCTTAACAGTCTATTTGGCTATCT
genomic: GTGATGAGCTATTTCAATGCCATATTCTTTAGAAACAGCGTAAATGTGTGgtaagttaat ... tccctctcagGTTCCAGTTCATTCCCCAGATGATATTTCTTAACAGTCTATTTGGCTATCT
EST: gi|254323448|gb|GR840145.1|GR840145
EST:     GTGATGAGCTATTTCAATGCCATATTCTTTAGAAACAGCGTAAATGTGTG                         GTTCCAGTTCATTCCCCAGATGATATTTCTTAACAGTCTATTTGGCTATCT
genomic: GTGATGAGCTATTTCAATGCCATATTCTTTAGAAACAGCGTAAATGTGTGgtaagttaat ... tccctctcagGTTCCAGTTCATTCCCCAGATGATATTTCTTAACAGTCTATTTGGCTATCT
EST: gi|193571235|gb|FK529050.1|FK529050
EST:     AATGCCATATTCTTTAGAAACAAGCGTAAATGTGTG                         GTTCCAGTTCATTCCCCAGATGATATTTCTTTAACAGTCTATTTGGCTATC
genomic: AATGCCATATTCTTTAGAAAC-AGCGTAAATGTGTGgtaagttaat ... tccctctcagGTTCCAGTTCATTCCCCAGATGATATTTC-TTAACAGTCTATTTGGCTATC
EST: gi|193719056|gb|FK651304.1|FK651304
EST:     TTTCAATGCCANATTCTTT-GAAACAGCGTAAATGTGTG                         GTTCCAGTTCATTCCCCAGATGATATTTCTTAACAGTCTATTTTGGCTATC
genomic: TTTCAATGCCATATTCTTTAGAAACAGCGTAAATGTGTGgtaagttaat ... tccctctcagGTTCCAGTTCATTCCCCAGATGATATTTCTTAACAGTCTA-TTTGGCTATC