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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAAACAATGTCAACTCTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGAgtatgtgtttagatagcagttgattattacttgtggaattatataatatggttggttagttaaatttgttattctattttgtcttatcgccctctttggttttttgttggctgcag

Basic information

species Glycine max
transcript GLYMA09G04910.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58021862|gb|CX708603.1|CX708603
EST:     CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGA                         GCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCACCCTTCC
genomic: CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGAgtatgtgttt ... ttggctgcagGCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCACCCTTCC
EST: gi|208133389|gb|GD929096.1|GD929096
EST:     CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGA                         GCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCACCCTTCC
genomic: CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGAgtatgtgttt ... ttggctgcagGCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCACCCTTCC
EST: gi|193634880|gb|FK583941.1|FK583941
EST:     TACAAACCAATAAAAAATACTGTTCGAGCAATGGCCCAGCATCCCAGAGA                         GCAAGCTTTTGCATCTGCTTCAGCTGACAATATT-AAAAGTTCACCCTTCC
genomic: TACAAACC-ATAAAAAAT-CTGTTCGAGCAATGGCCCAGCATCCCAAAGAgtatgtgttt ... ttggctgcagGCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCACCCTTCC
EST: gi|21888738|gb|BQ741951.1|BQ741951
EST:     CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAATA                         GTAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCACCCTTCC
genomic: CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGAgtatgtgttt ... ttggctgcagGCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCACCCTTCC
EST: gi|10236381|gb|BE805269.1|BE805269
EST:     CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGA                         GCAAAGCCTTTGCATCGTGCTTCAGCTGACAATATTAAAAAGTTCACCCTT
genomic: CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGAgtatgtgttt ... ttggctgcagGCAA-GCTTTTGCATC-TGCTTCAGCTGACAATATTAAAAAGTTCACCCTT
EST: gi|193460952|gb|FK426699.1|FK426699
EST:     CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGA                         GCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCACCCTTCC
genomic: CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGAgtatgtgttt ... ttggctgcagGCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCACCCTTCC
EST: gi|254313963|gb|GR831592.1|GR831592
EST:     CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGA                         GCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCAACCTTCC
genomic: CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGAgtatgtgttt ... ttggctgcagGCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCACCCTTCC
EST: gi|208324693|gb|GE125770.1|GE125770
EST:     CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGA                         GCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCACCCTTCC
genomic: CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGAgtatgtgttt ... ttggctgcagGCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCACCCTTCC
EST: gi|207777106|gb|GD747893.1|GD747893
EST:     CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGA                         GCAAGCTTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCACCCTTC
genomic: CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGAgtatgtgttt ... ttggctgcagGCAAGC-TTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCACCCTTC