Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAAAGATGGAACATTCCTGGAAGAACCTGGATCTGGTGCTGTGGCAACAATTTATGACAAAAAGGTTTCTGTTGGGACATTAGAATGGATTACCAGgtacttagtttgtccaaggatacacaatatagtatgttcctcaatttttttttaatatttttcattaatttattataaagaggatatttccttcaaacaa...

Basic information

species Glycine max
transcript GLYMA08G07710.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07710.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os08g37950.1 (Oryza sativa), 5'ss of exon 13
GTAAAAGATGGAACATTCCTGGAAGAACCTGGATCTGGTGCTGTGGCAACAATTTATGACAAAAAGGTTTCTGTTGGGACATTAGAATGGATTACCAGgtac-------ttagt--ttgtccaaggatacacaatatagtatgttcctc-aatttttttttaatatttttcattaatttattataaagaggatattt----ccttcaaacaa----------------------------------------------------------------------------------
| |||||||||| | ||| ||||||||||||| |||||||||||||| || |||   || ||| ||||||| ||||| ||| | || ||||| |  ||||||       ||| |  |||| ||    |    |||||    ||| | ||  ||      || | |   |||| |  | || | |  |    || | |     ||| |  | |                                                                                  
GCAAAAGATGGATCCTTCATGGAAGAACCTGGGTCTGGTGCTGTGGCGACCATTGGCGAGAAACAGGTTTCAGTTGGAACACTTGATTGGATCAGGAGgtacaaatgaattatttattgtgcagttgtgatgaatatgccttgtccttctgatagaaaatttacaaacttcagttctctactcttcacgctatctgttatgtcttaagtctactattttcttagttctagcaatacttaatgatgtactaaatatgatcactgagggactctgctcactacctaattgtttcag

upper sequence: GLYMA08G07710.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G315931_T01 (Zea mays), 5'ss of exon 13
GTAAAAGATGGAACATTCCTGGAAGAACCTGGATCTGGTGCTGTGGCAACAATTTATGACAAAAAGGTTTCTGTTGGGACATTAGAATGGATTACCAGgtactt---agttt----gtccaaggatacacaatatagtatgttcctcaat---------ttttttttaatatttttcatta-----atttattataaagaggatatttccttcaaacaa-------------------------------------------------------------------
| ||| |||||| | ||| |||||||||| ||||||||||||||||| || |||  ||| ||  ||||||||||||| |||||||| |||||||  |||||| |   |||||     || |  | ||  |  |||  ||  |||   ||             || | |   | | |  ||      ||   ||||  | | | ||| |  || |||                                                                      
GCAAATGATGGATCCTTCATGGAAGAACCAGGATCTGGTGCTGTGGCTACCATTGGTGAGAAGCAGGTTTCTGTTGGAACATTAGATTGGATTAGAAGgtacatatgagttttttgttctacagctatgccctatgctaaattcactaacaacatgagacacttctaatcgtctcttgttcctggtataccttatgtaaatgctatctgttttaaagttttctccctgcactgtcttgtaaaagtgtatgttgagcctgtttgctagtaaaattataatatttcag

upper sequence: GLYMA08G07710.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv12s0142g00330.t01 (Vitis vinifera), 5'ss of exon 5
GTAAAAGATGGAACATTCCTGGAAGAACCTGGATCTGGTGCTGTGGCAACAATTTATGACAAAAAGGTTTCTGTTGGGACATTAGAATGGATTACCAGgtacttagtttgtccaaggatacacaatatagtatgttcctcaatttttttttaatatttttcattaatttattataaagaggatatttccttcaaacaa------
|||   |||||||||||| ||||||||||||| ||||||||||| |||||  || |  | ||||||||||||||||| ||||| || ||| ||   ||||| |  | |  |     ||| | |   ||| |  |  | |   |  | | | |  |  | | ||||   ||   |  |     |||||   | ||| ||      
GTAGTGGATGGAACATTCGTGGAAGAACCTGGGTCTGGTGCTGTAGCAACTGTTGAGAATAAAAAGGTTTCTGTTGGTACATTTGACTGGGTTCAAAGgtattgtggtatt-----gat-ctcttcatactgggcacatggctcatatatcacaaaatctgattaccctaaattggaatttgtattttaatgaaaaaatgtttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8285693|gb|BE023252.1|BE023252
EST:     ACAATTTATGACAAAAAGGTTTCTGTTGGGACATTAGAATGGATTACCAG                         GCATGGAGTTATTAACAGTATACATCAAGAAGTGGAGAAGAGTAATAATCA
genomic: ACAATTTATGACAAAAAGGTTTCTGTTGGGACATTAGAATGGATTACCAGgtacttagtt ... ctttgtgcagGCATGGAGTTATTAACAGTATACATCAAGAAGTGGAGAAGAGTAATAATCA