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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAACCTGAGACATCAAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatttgttggagcatctactctttgactttaataggaaatgcttgaatgttcttatatatatagcataattgacattctgattaactttggaaacctggtcttatcttacaagttctttacattatag

Basic information

species Glycine max
transcript GLYMA06G16700.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16700.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os02g06300.1 (Oryza sativa), 5'ss of exon 13
TTTGAACCTGAGACATCAAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatttgttggagcatctactctt-tgactttaataggaaatgcttgaatgttcttatatat--atagcataattgacattctgattaactttggaaacctggtcttatcttacaagttctttacattatag
|||||||| ||  | |||||||||||||| |||||||| |||||||| ||||| || |||||||||||||| ||||| |||||||  ||    |    ||    | ||  |   | | |||  | | |||    ||   | | || |  | | ||||||   |  | || | |                                            
TTTGAACCAGAATCTTCAAGTGCCATGGGTTTTGGCTTCAGATGTGGATTTCTCGGTCTTCTTCATATGGAGATTGTGCAGgttcttataatctacttcactctcactagtccatctcatattaca-gctatggtgacttgaaatttcgacaacataatgttctctttgttcag-------------------------------------------

upper sequence: GLYMA06G16700.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G003157_T02 (Zea mays), 5'ss of exon 4
TTTGAACCTGAGACATCAAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatttgttggagcatctactctttgactttaataggaaatgcttgaatgttcttatatatatagcataattgacattctgattaactttggaaacctggtcttatcttacaagttctttacattatag
|||||||| ||  | || ||||||||||| |||||||| ||||||||||| || || ||||| ||||||||||| ||||||||||  |     |      |  |       |  | |  |  |||    |     ||   || | || | ||||  |     | |   ||  ||  |                                     
TTTGAACCAGAATCTTCTAGTGCCATGGGGTTTGGCTTCAGATGTGGGTTCCTTGGTCTTCTCCATATGGAAATAGTTCAGgttcttacaatctacttggttcatggcagtagctcataataaaaccactatggcttgacatttctacaacatagct-----tttttctattttcag-------------------------------------

upper sequence: GLYMA06G16700.1 (Glycine max), 5'ss of exon 13
lower sequence: AT5G08650.1 (Arabidopsis thaliana), 5'ss of exon 13
TTTGAACCTGAGACATCAAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatttgttggagcatctactctttgact-ttaataggaaatgcttgaatgttc-ttatatatatagcataattgacattctgattaactttggaaacctggtcttatcttacaagttctttacattatag
||||| ||||| || || |||||||||||||||||||||||||| |||||| |||| ||||| || ||||||||||| |||||  ||  |  || |  | |||  |  |  | | ||  | |    |   ||| ||    ||   |||  | || ||  || |     |  || ||   | |                                  
TTTGAGCCTGAAACTTCGAGTGCCATGGGATTTGGCTTTAGATGCGGGTTTTTGGGTCTTCTCCACATGGAAATTGTGCAGgtcagatatgtttcgctcttcttgttctaaagtgtttttggtgcgtctctgactgaaaatttcctatgcaacagaa--gatagagaaaagaaattcatagat---------------------------------

upper sequence: GLYMA06G16700.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 13
TTTGAACCTGAGACATCAAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatttgttgga--gcatctactctttgactttaataggaaatgcttgaatgttcttatatatatagcataattgacattctgattaactttggaaacctggtcttatcttacaagttctttacattatag--
||||| ||||||||||| ||||||||||| ||||||||||| ||||||||  |||| ||||| |||||||||||  ||||||| |  ||   ||  |  ||||||   ||    ||||| ||            || || ||  ||   ||   |||| ||  | ||||  || ||  | || |    |   |  |   |    |||||||  |    
TTTGAGCCTGAGACATCCAGTGCCATGGGCTTTGGCTTTAGGTGTGGGTTCTTGGGTCTTCTCCATATGGAAATCATTCAGgtccacatgctttcaactgcatctctgctgctcctttagta------------attttatttgatcagtaat-taatagat-tgctgacaaatttcaggaatcacaacacgttctctgataagtttacatcttgcag

upper sequence: GLYMA06G16700.1 (Glycine max), 5'ss of exon 13
lower sequence: EFJ20933 (Selaginella moellendorffii), 5'ss of exon 13
TTTGAACCTGAGACATCAAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatttgttggagcatctactctttgactttaataggaaatgcttgaatgttcttatatatatagcataattgacattctgattaactttggaaacctggtcttatcttacaagttctttacattatag
|||||||| || |  || ||||| ||||||||||| ||| ||||||| ||||| |||||| | || |||||||| || |||||    | |  |||| |||| | |  | |    ||||   |  |||    || | |   |                                                                         
TTTGAACCGGAAAGTTCGAGTGCAATGGGATTTGGATTTCGATGTGGATTTCTTGGCCTTTTGCACATGGAAATAGTACAGgt----aataattggcgcattttcattcttttcttaagctggcatg---aaacgcttacag------------------------------------------------------------------------

upper sequence: GLYMA06G16700.1 (Glycine max), 5'ss of exon 13
lower sequence: EFJ32321 (Selaginella moellendorffii), 5'ss of exon 13
TTTGAACCTGAGACATCAAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatttgttggagcatctactctttgactttaataggaaatgcttgaatgttcttatatatatagcataattgacattctgattaactttggaaacctggtcttatcttacaagttctttacattatag
|||||||| || |  || ||||| ||||||||||| ||| ||||||| ||||| |||||| | || |||||||| || |||||    | |  |||| |||| | |  | |   |||  || |   |  |  || | |   |                                                                         
TTTGAACCGGAAAGTTCGAGTGCAATGGGATTTGGATTTCGATGTGGATTTCTTGGCCTTTTGCACATGGAAATAGTACAGgt----aataattggcgcattttcattct---tttcttaagttttcatgaaacgcttacag------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208206734|gb|GE002511.1|GE002511
EST:     TGGGCCTTCTTCATATGGAAATTGTTCAG                         GAGAGGCTTGAGAGAGAATACAATTTGAGCCTAATAACAACTGCTCCAAGT
genomic: TGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaattt ... tacattatagGAGAGGCTTGAGAGAGAATACAATTTGAGCCTAATAACAACTGCTCCAAGT