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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACAACTGCACTTTTTGAGgtgaatataattctaaattggattaaatatctttttggtcctccaaatttggaccaagtttgctttaggtccctcaaattttaaagtgattttcttagtc...

Basic information

species Glycine max
transcript GLYMA05G26240.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G26240.2 (Glycine max), 5'ss of exon 13
lower sequence: AT2G35020.1 (Arabidopsis thaliana), 5'ss of exon 13
GAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACAACTGCACTTTTTGAGgtgaatataattctaaattggattaaatatctttttggtcctccaaatttggaccaagtttgctttaggtc--cctcaaattttaaagtgattttcttagtc-------
|||||| ||||| || ||| ||||  | | | ||||| ||||||| |||||||| ||||| |||   ||||| ||||||||| | ||||||||||||||||| | |||   | || |||| || ||| | |        |          |||   ||||  || |  |     ||||  |  ||  |||   ||  | |||       
GAAGAAGATACCGTCTATAAATGGCGACATAGTGGGACTAAAACTAGAACAGTTCATATTCGATTGCTTTCCTTATGCTCCTTCGACTGCACTTTTTGAGgt-attatttctttatattgtatgaaaca-cacacaaaccgatatttgcaggattcagttaactgttagcaaatctcatttcctactgtggggtttcttgtctttttag

upper sequence: GLYMA05G26240.2 (Glycine max), 5'ss of exon 13
lower sequence: AT1G31070.2 (Arabidopsis thaliana), 5'ss of exon 13
GAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACAACTGCACTTTTTGAGgtg-aatat-aattctaaattggattaaatatctttttggtcctccaaatttggaccaagtttgctttaggtccctcaaattttaaagtgattttcttagtc
|||||| ||||| || ||  ||||||| ||||||||| ||||||| ||||| || || |||||| | ||||| ||||||||| |||| ||||||||||||||  | ||| |||||    ||  |  | |||     |       |||||| |  |  |        || |||    | |  | ||                 
GAAGAAGATACCATCTATGAATGGATACACAATGGGACTAAAACTAGAACAATTCATTTTTGATTCGTTTCCTTATGCTCCTTCAACCGCACTTTTTGAGgtatagtatcaattcatttttacacaatatactaactaaagaaaccaaatattaaaaactgagaaattgggttgtgctatgtgtag----------------

upper sequence: GLYMA05G26240.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 13
GAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACAACTGCACTTTTTGAGgtgaatataat-tctaaattggattaaatatctttttggtcctccaaatttggaccaagtttgctttaggtccctcaaattttaaagtgattttcttagtc
|||||||||  |||| |  || ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||| |||||||||||| |||||||| | |  | ||| | || ||   |  |  || ||   ||  |  | |||     | | |   ||       ||    | |      || |||      
GAAGAAAATCGCTTCAACCCACGGATACACAATGGGATTAAAACTAGAGCAGTTTATATTTGATGCATTTCCATATGCCCCTTCAACTGCACTTTATGAGgtgatttttctctctcactttgacccagcaatttattttcccatctcacttgattttaatctcacttgaaaatttc----tctgcgccaatattcag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19938086|gb|BQ081553.1|BQ081553
EST:     AGTTTATATTTGATGCATTTCCATATGCTCCTACAACTGCACTTTTTGAG                         GTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
genomic: AGTTTATATTTGATGCATTTCCATATGCTCCTACAACTGCACTTTTTGAGgtgaatataa ... ccattttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT