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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGACAAATCTTACAGTTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTCTTTCCATATACCAGCTTATTTCAGGAAAGACAAAAGAGgtcagaaatgctatattatatgtgtgtgtgtgtgtattgcaattatgattctacttgatacccatttttatatgcaggaagttgtgcag

Basic information

species Glycine max
transcript GLYMA04G09130.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G09130.2 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os01g54020.1 (Oryza sativa), 5'ss of exon 13
TTATGACAAATCTTACAGTTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTCTTTCCATATACCAGCTTATTTCAGGAAAGACAAAAGAGgtcagaaatgctatattatatgtgt--------------gtgtgtgtgtattgcaattatgattctacttgatacccatttttatatgcaggaagttgtgcag---------------------------------------------------------------------------------
                   ||||||||||||||| | |||||||||||||| ||||||||||| || || |||||| ||||| |||| || || ||||||||    |||  |    |  |||  |                  | | ||   |||        |  || ||||      |||  | | |||      ||   |                                                                                 
------------------CTTGGAATTTGACAACCCAGAGAGGCCTGAATGCAACAATCTTCTCTCGATCTACCAGATTATTACAGGGAAAACTAAAGAGgtggccaatctttacatgcatgctttgcaaacctaaccaaccagagcgtgaagcagggtcacctgcacatgatggtttctttcgtgtccagtccagcgtcatgttttcttgttgacgatgacaagataattttcctagttcactatccaagaagttgatcgtttcaataattttattttgacag

upper sequence: GLYMA04G09130.2 (Glycine max), 5'ss of exon 13
lower sequence: AT2G25840.2 (Arabidopsis thaliana), 5'ss of exon 11
TTATGACAAATCTTACAGTTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTCTTTCCATATACCAGCTTATTTCAGGAAAGACAAAAGAGgtcagaaatgctatattatatgtgtgtgtgtgtgtattgcaattatgattctacttgatacccatttttata--tgcaggaagttgtgcag------------------------------------
                 | ||| ||||||||||  ||||||| |||||||| |||||||| || || ||||| ||| || ||||||| |||| |||||||||  | |     | || ||    || |   | ||  |  |    ||| ||  || ||   |  | |    |   | ||   | |  |  ||                                    
-----------------GCTTG-AATTTGACAATGCTGAGAGACCTGAATGCAACAATCTCCTCTCAATATATCAGATTGTTTCAGGCAAGAAAAAAGAGgtatggagaaagagataat----gtttagatttgggtcacggagatgctttcacatgtctcttactcccttgactacaatgattacttaagatataatccggtgaccacatttttaatcggttgcag

upper sequence: GLYMA04G09130.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv04s0008g00200.t01 (Vitis vinifera), 5'ss of exon 13
TTATGACAAATCTTACAGTTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTCTTTCCATATACCAGCTTATTTCAGGAAAGACAAAAGAGgtcagaaatgctatattatatgtgtgtgtgtgtgtattgcaattatgattctacttgatacccatttttatatgcag----gaagttgtgcag---------
                    |||||||||||||  ||||| | |||||||| ||||| |||||| | || || ||||| || ||||| | ||||||||||||   || ||  ||   |||||      |  || | |      |||   | |     ||  |  ||   | |||||     ||  || ||            
------------------CCTGGAATTTGACAATCCTGAGCGACCTGAATGCAACAACCTTCTTACAATTTATCAGCTAATGTCAGGCAGGACAAAAGAGgt--aaagtgaaattacatatggcctctttggtttttaatgcctatccctatgtcatattgctgttaccacatgcatatatgactttatgtttctttatttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22928092|gb|BU545231.1|BU545231
EST:     CTTCTTTCCATATACCAGCTTATTTCAGGAAAGACAAAAGAG                         GAATGCCAAAACATGAATTGGGGCGCTTTCAAACCTCTTTTAACAGATGCC
genomic: CTTCTTTCCATATACCAGCTTATTTCAGGAAAGACAAAAGAGgtcagaaatg ... agttgtgcagGAATGCCAAAACATGAATTGGGGCGCTTTCAAACCTCTTTTAACAGATGCC