Sequence
atgc intronic sequence ATGC exonic sequenceTCTACTCTCGAATTCAAGATGGTGGCTGGATGAATACAAGTTTGATGGATTTCGATTTGATGGTGTTACATCAATGATGTACACTCATCATGGATTGGAGgtacattctaattgaatatcctaaaatttgaaacataacaaaaaatcctaaatattaaattattcaaattcaaattacaaatatttaggaatatatcttc...
Basic information
species | Glycine max |
transcript | GLYMA03G35020.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G35020.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 13
TCTACTCTCGAATTCAAGATGGTGGCTGGATGAATACAAGTTTGATGGATTTCGATTTGATGGTGTTACATCAATGATGTACACTCATCATGGATTGGAGgtacatt------------ctaattgaatatc-ctaaaatttgaaacataacaaaa--aatcctaaatatta--aattatt-caaattca-aattacaaatatttaggaatatatcttc---------------------
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TCTACTATCCAATGCAAGATGGTGGCTCGAGGAGTATAAGTTTGATGGTTTCAGATTTGACGGTGTAACCTCAATGATGTACACTCATCATGGATTACAAgtatattgcttcgttttcattactttatcttcactaccttcttaattatgatggggtcaaacctagcagttgctatctgttacaatttcatatttatttgcgtcataacctttatcttatgattccaccctctattttag
upper sequence: GLYMA03G35020.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G032628_T01 (Zea mays), 5'ss of exon 13
TCTACTCTCGAATTCAAGATGGTGGCTGGATGAATACAAGTTTGATGGATTTCGATTTGATGGTGTTACATCAATGATGTACACTCATCATGGATTGGAGgtacattctaattgaatatcctaaaatttgaaacataacaaaaaatccta----aatattaaattattcaaattcaaattacaaatatttaggaatatatcttc-----------------------------------------------
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TCTTCTCTCCAATGCTAGATGGTGGCTCGAGGAATATAAGTTTGATGGTTTCCGTTTTGATGGTGTGACCTCCATGATGTACACTCATCACGGATTACAAgta-atttaagctttatgcctgttagtttatcttcacttgctaagtctgactggaatactggattatgcc--tgggaactagttttgtttagtatcatatttgttatatatcattccttcttctaatctaaagtcatgcattttactttag
upper sequence: GLYMA03G35020.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G073054_T02 (Zea mays), 5'ss of exon 13
TCTACTCTCGAATTCAAGATGGTGGCTGGATGAATACAAGTTTGATGGATTTCGATTTGATGGTGTTACATCAATGATGTACACTCATCATGGATTGGAGgtacattctaattgaatatcctaa-aatttgaaa-cataacaaaaaatcctaaatattaaattattcaaattc--aaattacaaatatttaggaatatatcttc
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TCTATTGTCAAATGCGAGATGGTGGCTTGAAGAATATAAATTTGATGGGTTTCGATTTGATGGGGTGACCTCCATGATGTATACTCACCATGGATTACAAgtaagtt-taccagataattcaagtagtctgatttcacggttctctagtgggtgcattgtgctgtccgttttctgaaataattgctctgcttaattgcatg---
upper sequence: GLYMA03G35020.1 (Glycine max), 5'ss of exon 13
lower sequence: AT5G03650.1 (Arabidopsis thaliana), 5'ss of exon 13
TCTACTCTCGAATTCAAGATGGTGGCTGGATGAATACAAGTTTGATGGATTTCGATTTGATGGTGTTACATCAATGATGTACACTCATCATGGATTGGAGgtacat--------tcta-attgaatatcc--taaaatttgaaacataacaaaaaatcctaaatattaaatta--ttcaaattcaaattacaaatatttaggaatatatcttc-----------------
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TCTCCTTTCAAATGCACGGTGGTGGCTAGAAGAATACAAGTTTGATGGATTTAGATTTGATGGTGTAACCTCAATGATGTATACTCATCATGGACTCTCGgtacttcaaacttttctacaatggatggctaatgcaatctttatgtttttcccatctttccaatgttgtatcagctttaagtatatcttaggtcggtctgctgaccttctattttgtgggttttggatag
upper sequence: GLYMA03G35020.1 (Glycine max), 5'ss of exon 13
lower sequence: AT2G36390.1 (Arabidopsis thaliana), 5'ss of exon 13
TCTACTCTCGAATTCAAGATGGTGGCTGGATGAATACAAGTTTGATGGATTTCGATTTGATGGTGTTACATCAATGATGTACACTCATCATGGATTGGAGgta-cattctaat-tgaatatcctaaaatttgaaacataacaaaaaatcctaaatattaaattattcaaattcaaattacaaatatttaggaatatatcttc---------------
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TCTTCTTTCCAACGCGAGATGGTGGCTGGAAGAATACAAGTTTGATGGGTTCAGATTTGATGGTGTGACTTCCATGATGTACACTCATCATGGACTGCAGgtggtatttttgtatggaattagttttgttctttatgtcactatttgatagtatcctacaaatatgcaaatgcaaaaagatggctttatggaacctaactgctagcgtttgtggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207810208|gb|GD781066.1|GD781066EST: TTCGATTTGATGGTGTTACATCAATGATGTACACTCATCATGGATTGGAG GTAGCATTTACTGGAAATTACAATGAGTATTTTGGTTTTG
genomic: TTCGATTTGATGGTGTTACATCAATGATGTACACTCATCATGGATTGGAGgtacattcta ... gtgactgtagGTAGCATTTACTGGAAATTACAATGAGTATTTTGGTTTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTACTCTCGAATTCAAGATGGTGGCTGGATGAATACAAGTTTGATGGATTTCGATTTGATGGTGTTACATCAATGATGTACACTCATCATGGATTGGAGgtacattctaattgaatatcctaaaatttgaaacataacaaaaaatcctaaatattaaattattcaaattcaaattacaaatatttaggaatatatcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG