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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCATCTCCATATATAAAGTGGTATTATCAGAAAAGATAAAGAAAAGCCTACTTGATACTCTTAATGAGAATTTGAGACATCCTAATTCTCAGATACAGgttatattcctctgatacaagcaatttgtgttaccattttactattgtttaatattgtcagcttatgccaattgggcattatatatctgacaagcaatatcagcttatgccag

Basic information

species Glycine max
transcript GLYMA20G24470.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24470.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os10g36490.1 (Oryza sativa), 5'ss of exon 10
ATGCATCTCCATATATAAAGTGGTATTATCAGAAAAGATAAAGAAAAGCCTACTTGATACTCTTAATGAGAATTTGAGACATCCTAATTCTCAGATACAGgttatattcctctgatacaagcaatttgtgttaccattttactattgtttaatattgtcagcttatgccaattgggcattatatatctgacaagcaatatcagcttatgccag
|||||| || || | |    |    ||    || |||| ||||| |||  |  | || || ||||||||||||||||| ||||| ||| |||| |||||||| | |    |||         |||  |       |      |    | ||||  ||   | ||| || |     |  |  |||| ||  | ||   | |||| |        
ATGCATTTCTATGTCTGGGATATCCTTGAATGAGAAGACAAAGAGAAGTTTGTTAGAAACCCTTAATGAGAATTTGAGGCATCCCAATGCTCAAATACAGgtgagagctttctttggtcttgaatcagcaactgaacaaatttcccatgtaattatgcttggttaggctac---agtctactataactttccagt--tctcaggt--------

upper sequence: GLYMA20G24470.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM5G816015_T01 (Zea mays), 5'ss of exon 1
ATGCATCTCCATATATAAAGTGGTATTATCAGAAAAGATAAAGAAAAGCCTACTTGATACTCTTAATGAGAATTTGAGACATCCTAATTCTCAGATACAGgttatattcctctg------atacaagcaatttgtgttaccattttactattgtttaa-tattgtcagcttatgccaattgggcattatatatctgacaagcaatatcagcttatgccag--------------------------------------------------------------------------------
                         ||    || | || ||||||| |  |  | || || ||||||||||||||| | ||||| |||||||| |||||||| | | |   ||        ||    || |   |   |        |        || || |  || ||| |  |  |    |  ||| |  |  |    |  | |     | | || |                                                                                
-----------------------CCTTGAATGACAGGACAAAGAAATGTTTGTTGGAAACCCTTAATGAGAATTTGCGTCATCCCAATTCTCAAATACAGgtgaaactttactattttctgtatgtacattcaatcagagtgccccccccccccccaagtactaccatcttgtttc--tcattcgatatgtcaccaatcccctttttgtttgtgtacctgtacttttcggatactgtactattgtaatactagccatctatgtttctagactgaatattttcttttcacaatttgtccag

upper sequence: GLYMA20G24470.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G303758_T01 (Zea mays), 5'ss of exon 4
ATGCATCTCCATATATAAAGTGGTATTATCAGAAAAGATAAAGAAAAGCCTACTTGATACTCTTAATGAGAATTTGAGACATCCTAATTCTCAGATACAGgttatattcctctg------atacaagcaatttgtgttaccattttactattgtttaa-tattgtcagcttatgccaattgggcattatatatctgacaagcaatatcagcttatgccag--------------------------------------------------------------------------------
|||||| || |||  |    |    ||    || | || ||||||| |  |  | || || ||||||||||||||| | ||||| |||||||| |||||||| | | |   ||        ||    || |   |   |        |        || || |  || ||| |  |  |    |  ||| |  |  |    |  | |     | | || |                                                                                
ATGCATTTCTATAGCTGGGATATCCTTGAATGACAGGACAAAGAAATGTTTGTTGGAAACCCTTAATGAGAATTTGCGTCATCCCAATTCTCAAATACAGgtgaaactttactattttctgtatgtacattcaatcagagtgccccccccccccccaagtactaccatcttgtttc--tcattcgatatgtcaccaatcccctttttgtttgtgtacctgtacttttcggatactgtactattgtaatactagccatctatgtttctagactgaatattttcttttcacaatttgtccag

upper sequence: GLYMA20G24470.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G60740.1 (Arabidopsis thaliana), 5'ss of exon 11
ATGCATCTCCATATATAAAGTGGTATTATCAGAAAAGATAAAGAAAAGCCTACTTGATACTCTTAATGAGAATTTGAGACATCCTAATTCTCAGATACAGgt---tatattcctctgatacaagcaatttgtgttaccattttactattgtttaata-ttgtcagcttatgccaattgggcattatatatctgacaagcaatatcagcttatgccag
 || || ||  |||   | |||   ||| | ||||  | | |    | | | ||||||||||| | ||||||||| |||||||| |||||||| ||||||||   ||| || ||   |  || | | ||  | | | | | |||  |   || |||| ||| ||  ||   |  |||   ||                                   
GTGTATTTCGTTATCGCATGTGACTTTAGCTGAAAGAACAGAACGGATCTTGCTTGATACTCTCACTGAGAATTTAAGACATCCCAATTCTCAAATACAGgtacctatctttctaaaagtcatgaagttattctcatcctattagcagaattcaatagttgacaagtttcacttattatacag----------------------------------

upper sequence: GLYMA20G24470.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv15s0048g00470.t01 (Vitis vinifera), 5'ss of exon 11
ATGCATCTCCATATATAAAGTGGTATTATCAGAAAAGATAAAGAAAAGCCTACTTGATACTCTTAATGAGAATTTGAGACATCCTAATTCTCAGATACAGgttatattcctctgatacaagcaatttgtgtt-acca--ttttactattgtttaatattgtcagcttatgccaattgggcattatatatctgacaagcaatatcagcttatgccag
||| || ||  ||  |    |  |  || |||| |||| |||   ||  || ||||||||||| || ||||||||||| ||||||||||| |||||||||||     |  | |    |||  | | | || | |  |  ||||| |  | |||| || | | |    ||  | | | | ||| || | |   |  | |  || |||          
ATGTATATCTTTAGCTTGTTTATTTGTACCAGAGAAGACAAAACGAACTCTGCTTGATACTCTCAACGAGAATTTGAGGCATCCTAATTCCCAGATACAGgtgtctcttttttagctcaatgactgtttgctcattaggttttatttctcttta-taatat-attgaatttctaatagacat-attttttccatgaactgta-cag----------