1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATCCTATAGAGCTGGAACAAGATCAACTAATTGAAGGTTTGGTAACATTGTCACAGAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATACgtgagtcaaaacaatttctttcaccaaaatatgcctttagggtaactttttaatggatttctgactttgttctctgccattgcag
species | Glycine max |
transcript | GLYMA20G00220.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TCACAGAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATAC TTCAGGTGGTCGATCTTATGTGAAAGAGTCTGTTATGAGATGATCTTTTCTEST: gi|7639154|gb|AW733482.1|AW733482
genomic: TCACAGAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATACgtgagtcaaa ... gccattgcagTTCAGGTGGTCGATCTTATGTGAAAGAGTCTGTTATGAGATGATCTTTTCT
EST: TCACAGAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATAC TTCAGGTGGTCGATCTTATGTGAAAGAGTCTGTTATGAGATGATCTEST: gi|209729503|gb|BW655119.1|BW655119
genomic: TCACAGAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATACgtgagtcaaa ... gccattgcagTTCAGGTGGTCGATCTTATGTGAAAGAGTCTGTTATGAGATGATCT
EST: AGAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATAC TTCAGGTGGTCGATCTTATGTGAAAGAGTCTGTTATGAGATGATCTTTTCTEST: gi|6726079|gb|AW310478.1|AW310478
genomic: AGAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATACgtgagtcaaa ... gccattgcagTTCAGGTGGTCGATCTTATGTGAAAGAGTCTGTTATGAGATGATCTTTTCT
EST: TCACAGAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATAC TTCAGGTGGTCGATCTTATGTGAAAGAGTCTGTTATGAGATGATCTTTTCT
genomic: TCACAGAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATACgtgagtcaaa ... gccattgcagTTCAGGTGGTCGATCTTATGTGAAAGAGTCTGTTATGAGATGATCTTTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCTATAGAGCTGGAACAAGATCAACTAATTGAAGGTTTGGTAACATTGTCACAGAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATACgtgagtcaaaacaatttctttcaccaaaatatgcctttagggtaactttttaatggatttctgactttgttctctgccattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA