Sequence
atgc intronic sequence ATGC exonic sequenceGTGGGGGAAAAAACTAAATTATGTAATAGCCATAGCAAAAGATGGAGTTTATGATGTCACCAAACGATACACAAGGAAGTGGCATGAGgtaggttttacaatttatgctctttctttcacaagcatgaggatcccaatttgctaataatttatgacgaatttttgtatctttttcaaaattaag
Basic information
species | Glycine max |
transcript | GLYMA19G43320.4 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G43320.4 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os07g31460.2 (Oryza sativa), 5'ss of exon 11
GTGGGGGAAAAAACTAAATTATGTAATAGCCATAGCAAAAGATGGAGTTTATGATGTCACCAAACGATACACAAGGAAGTGGCATGAGgtagg---ttttacaat--ttatgctctttctttcacaagcatgaggatcccaatttgctaataattt-atgacgaatttttgtat-ctttttcaaaattaag-
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GTGGAACAAGAAACTAGATTATGTAATTGCTATTTCAAAAGATGGAGTACGTGATGTAACAAAACGCTACACCAGAAAGTGGCATGAGgtagaaaattttggcttggttaagacctgtgttgaggctgggtaggataggtgtgtttagaatgttttgatttttatttcatgcatactgcttgtcaattgcag
upper sequence: GLYMA19G43320.4 (Glycine max), 5'ss of exon 12
lower sequence: Vv14s0030g01930.t01 (Vitis vinifera), 5'ss of exon 12
GTGGGGGAAAAAACTAAATTATGTAATAGCCATAGCAAAAGATGGAGTTTATGATGTCACCAAACGATACACAAGGAAGTGGCATGAGgtag-------gttttacaatttatgc----tctttctttcacaagcatgaggatcccaatt-tgctaataatttatgacgaatttttgtatctttttcaaaattaag---------------------------
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CTGGAACAAGAAATTGAATTATATAATTGCTATCGCAAAAGATGGAGTTTATGATGTCACTAAACGCTACACAAGAAAGTGGCATGAGgtaataagattattgtaacattcattcatcatcagtttttcagtaaagggcaattatttattctgcccttcgcatacgtgcatgcttgctgttttgttcagtttttgatggggcacgaatattttcatgttacag
upper sequence: GLYMA19G43320.4 (Glycine max), 5'ss of exon 12
lower sequence: EFJ38670 (Selaginella moellendorffii), 5'ss of exon 8
GTGGGGGAAAAAACTAAATTATGTAATAGCCATAGCAAAAGATGGAGTTTATGATGTCACCAAACGATACACAAGGAAGTGGCATGAGgtaggttttacaatttatgctctttctttcacaagcatgaggatcccaatttgctaataatttatgacgaatttttgtatctttttcaaaattaag
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ATGGGGAAAGAAGCTGAACTACGTCATT-CCGTTGCGAAAGATGGAGTTTATGATGTTACAAAACGATACACACGGAAGTGGGCAGAGgta-------caaactatattcctgtatttgtgtg-gcgcttctttgactttgttg-taaaaggtagtgtctcgcag-------------------
upper sequence: GLYMA19G43320.4 (Glycine max), 5'ss of exon 12
lower sequence: EFJ38667 (Selaginella moellendorffii), 5'ss of exon 7
GTGGGGGAAAAAACTAAATTATGTAATAGCCATAGCAAAAGATGGAGTTTATGATGTCACCAAACGATACACAAGGAAGTGGCATGAGgtaggttttacaatttatgctctttctttcacaagcatgaggatcccaatttgctaataatttatgacgaatttttgtatctttttcaaaattaag
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ATGGGGAAAGAAGCTGAACTACGTCATTGCCGTTGCGAAAGATGGAGTTTATGATGTTACAAAACGATACACACGGAAGTGGCCAGAGgta-------caaactatattcctgtatttgtgtg-gcgcttctttgactttgttgtaaaag----------------------------------
upper sequence: GLYMA19G43320.4 (Glycine max), 5'ss of exon 12
lower sequence: EFJ38669 (Selaginella moellendorffii), 5'ss of exon 7
GTGGGGGAAAAAACTAAATTATGTAATAGCCATAGCAAAAGATGGAGTTTATGATGTCACCAAACGATACACAAGGAAGTGGCATGAGgtaggttttacaatttatgctctttctttcacaagcatgaggatcccaatttgctaataatttatgacgaatttttgtatctttttcaaaattaag
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ATGGGGAAAGAAGCTGAACTACGTCATT-CCGTTGCGAAAGATGGAGTTCATGATGTTACAAAACGATACACACGGAAGTGGGCAGAGgtacaaactatattcttgtatttatgttgtaaaaggtagtgtctcgcag-----------------------------------------------
upper sequence: GLYMA19G43320.4 (Glycine max), 5'ss of exon 12
lower sequence: EFJ38668 (Selaginella moellendorffii), 5'ss of exon 7
GTGGGGGAAAAAACTAAATTATGTAATAGCCATAGCAAAAGATGGAGTTTATGATGTCACCAAACGATACACAAGGAAGTGGCATGAGgtaggttttacaatttatgctctttctttcacaagcatgaggatcccaatttgctaataatttatgacgaatttttgtatctttttcaaaattaag
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ATGGGGAAAGAAGCTGAACTACGTCATTGCCGTTGCGAAAGATGGAGTTTATGATGTTACAAAACGATACACACGGAAGTGGCCAGAGgta-------cgaactatattcctgtatttgtgtg-gcgcttctttgactttgttgtaaaag----------------------------------
upper sequence: GLYMA19G43320.4 (Glycine max), 5'ss of exon 12
lower sequence: EFJ31479 (Selaginella moellendorffii), 5'ss of exon 8
GTGGGGGAAAAAACTAAATTATGTAATAGCCATAGCAAAAGATGGAGTTTATGATGTCACCAAACGATACACAAGGAAGTGGCATGAGgtaggttttacaatttatgctctttctttcacaagcatgaggatcccaatttgctaataatttatgacgaatttttgtatctttttcaaaattaag
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ATGGGGAAAGAAGCTGAACTACGTCATTGCCGTTGCGAAAGATGGAGTTTATGATGTTACAAAACGATACACACGGAAGTGGCCAGAGgtacaaactatattgtgtggcgcttctttgactttgttgtaaaag---------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19347866|gb|BM892501.1|BM892501EST: AAGATGGAGTTTATGATGTCACCAAACGATACACAAGGAAGTGGCATGAG GTCCTATCTCGACGTACTATCCTTACAGAGCCTTCTTTGTCAACTTTACTC
genomic: AAGATGGAGTTTATGATGTCACCAAACGATACACAAGGAAGTGGCATGAGgtaggtttta ... caaaattaagGTCCTATCTCGACGTACTATCCTTACAGAGCCTTCTTTGTCAACTTTACTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGGGGAAAAAACTAAATTATGTAATAGCCATAGCAAAAGATGGAGTTTATGATGTCACCAAACGATACACAAGGAAGTGGCATGAGgtaggttttacaatttatgctctttctttcacaagcatgaggatcccaatttgctaataatttatgacgaatttttgtatctttttcaaaattaag
- - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA