Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTTTCTGGAGTTGATGAAGGTGCCAAGGGTGGAGTCAAAATTAAGAGTATTTGCATTCAAGATTCAGTTTGGTTCTCAGgtctggtgatgtctgtaatatttttctgacttctgaatgttcggtggacttggctttttccttcagatatcatactttgcttgttatgcag

Basic information

species Glycine max
transcript GLYMA17G11100.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G11100.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G398731_T01 (Zea mays), 5'ss of exon 5
TTTTTTCTGGAGTTGATGAAGGTGCCAAGGGTGGAGTCAAAATTAAGAGTATTTGCATTCAAGATTCAGTTTGGTTCTCAGgtctggtgatgtctgtaatatttttctgacttctgaatgttcgg-tggacttggcttttt-ccttcagatatcatactttgcttgttatgcag
|| ||||| ||||| ||||||||||||||||| || || ||  | |   ||||||| |||||||||||||||   |||||||||   || ||   |||| |||||  |   || |||   ||  | ||  | ||||||||  || ||  |  |  | ||||   | |||     
TTCTTTCTAGAGTTAATGAAGGTGCCAAGGGTTGAATCTAAGCTTAAGATATTTGCTTTCAAGATTCAGTTTCAGTCTCAGgtcatatgttg---gtaacattttgata--ttttgatcattgagatgttcatggcttttcaccatccaactttcttctttttctcttag----

upper sequence: GLYMA17G11100.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv17s0000g06640.t01 (Vitis vinifera), 5'ss of exon 11
TTTTTTCTGGAGTTGATGAAGGTGCCAAGGGTGGAGTCAAAATTAAGAGTATTTGCATTCAAGATTCAGTTTGGTTCTCAGgtctggtgatgtctgtaatatttttctgacttctgaatgttcggtggacttggctt-----------tttccttcagatatcatact---ttgcttgttatgcag
|| ||||||||| ||||||| |||||  | |||||||| ||||||||||||||| | ||||||||||| ||||| |||||||| ||||| | |||| | |  || ||||| || |||| | |   | ||| |   ||            || | | ||   || || |   || ||| || |||||
TTCTTTCTGGAGCTGATGAAAGTGCCCCGTGTGGAGTCTAAATTAAGAGTATTTTCCTTCAAGATTCAATTTGGATCTCAGgtttggtggtatctgcattggttatctga-ttttgaaagatttatagaccttctttgaacaagtaagcttgccttagccgtcttattgttttacttattttgcag