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TCTGGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGTAAgtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcaggccacgag
species | Glycine max |
transcript | GLYMA15G19670.4 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ATATTCAAGTGGATTGGGCCACGAA GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|9259105|gb|BE347252.1|BE347252
genomic: ATATTCAAGTGGATTGGGT-A--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAA GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|254335832|gb|GR847360.1|GR847360
genomic: ATATTCAAGTGGATTGGGT-A--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|254335832|gb|GR847360.1|GR847360
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|16346239|gb|BI971834.1|BI971834
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGAEST: gi|10255898|gb|BE823664.1|BE823664
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|10255898|gb|BE823664.1|BE823664
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|8827562|gb|BE211292.1|BE211292
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGAEST: gi|9258826|gb|BE346973.1|BE346973
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|9258826|gb|BE346973.1|BE346973
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|208161996|gb|GD960109.1|GD960109
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|208161996|gb|GD960109.1|GD960109
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|22932883|gb|BU550022.1|BU550022
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGAEST: gi|209718197|gb|BW657829.1|BW657829
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|209718197|gb|BW657829.1|BW657829
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|19934585|gb|BQ079615.1|BQ079615
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGAEST: gi|254315874|gb|GR825683.1|GR825683
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|254315874|gb|GR825683.1|GR825683
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|7795093|gb|AW780490.1|AW780490
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGAEST: gi|9259222|gb|BE347430.1|BE347430
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGAEST: gi|20449673|gb|BQ253797.1|BQ253797
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: ATATTTAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|20449673|gb|BQ253797.1|BQ253797
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTTAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|209706452|gb|BW680739.1|BW680739
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|209706452|gb|BW680739.1|BW680739
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|254316180|gb|GR827717.1|GR827717
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGAEST: gi|192309268|gb|FG999145.1|FG999145
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAGTGGAGCTGAGEST: gi|192309268|gb|FG999145.1|FG999145
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAGTGGAGCTGAGEST: gi|298186164|gb|HO036797.1|HO036797
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGAEST: gi|16349012|gb|BI974607.1|BI974607
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|16349012|gb|BI974607.1|BI974607
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|31466759|gb|CD408787.1|CD408787
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|31466759|gb|CD408787.1|CD408787
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|31463990|gb|CD406018.1|CD406018
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|31463990|gb|CD406018.1|CD406018
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|254316181|gb|GR827718.1|GR827718
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|254316181|gb|GR827718.1|GR827718
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|254335833|gb|GR847361.1|GR847361
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|254335833|gb|GR847361.1|GR847361
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|12773669|gb|BG238596.1|BG238596
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|12773669|gb|BG238596.1|BG238596
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|22932160|gb|BU549299.1|BU549299
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGAEST: gi|19936658|gb|BQ080961.1|BQ080961
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGAEST: gi|19054093|gb|BM732760.1|BM732760
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGAEST: gi|5760084|gb|AI965447.1|AI965447
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGEST: gi|5760084|gb|AI965447.1|AI965447
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: ATATTCAAGTGGATTGGGCCACGAG GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGTAAgtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcaggccacgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA