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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGGTGCTGCATTTTGTTTTGGGGCCTTCTTATTCAGAAGCATGTATGGCTTCCTTGCTCTTTTCTCTATTGGTGAACTTCTTGTTTTTGCCACTCAGgtagtttccttctattcaattaatatctctttatgtttaattgctatattgaag

Basic information

species Glycine max
transcript GLYMA15G06660.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G06660.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G64500.1 (Arabidopsis thaliana), 5'ss of exon 11
TATTGGTGCTGCATTTTGTTTTGGGGCCTTCTTATTCAGAAGCATGTATGGCTTCCTTGCTCTTTTCTCTATTGGTGAACTTCTTGTTTTTGCCACTCAGgtagtttccttctattcaattaatatctctttatgttt----aattgctatattgaag-------------------
||| || ||   |||||| ||||  || ||||  ||||  ||||||||||  ||  | ||||||||  || |||||||||||||||| |||||||| |||||| | ||    |   | ||| ||||  ||| ||||||    |||     | ||                       
TATAGGAGCAATATTTTGCTTTGCTGCTTTCTGTTTCAAGAGCATGTATGCATTTTTAGCTCTTTTTGCTGTTGGTGAACTTCTTGTCTTTGCCACACAGgtaatctcgacttccaccattcatata-cttcatgttttgcaaatccacctcttctgatttatttcatgatgtttag

upper sequence: GLYMA15G06660.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 10
TATTGGTGCTGCATTTTGTTTTGGGGCCTTCTTATTCAGAAGCATGTATGGCTTCCTTGCTCTTTTCTCTATTGGTGAACTTCTTGTTTTTGCCACTCAGgtagtttccttctattcaattaatatc-tctttatgtttaattgctatattgaag---------------------------------------------
| | || ||   || ||| ||| | ||||| |  || |  ||| | ||||| ||||| ||||||||||| ||||||||| | || |||||||| ||||||||| |||| || |    |   || ||  | ||||  ||||||| |  ||||  |                                              
TTTCGGGGCAATATGTTGCTTTAGTGCCTTTTGTTTTAAGAGCCTTTATGGTTTCCTAGCTCTTTTCTCAATTGGTGAATTACTCGTTTTTGCTACTCAGgtaatttcattatgagaatacaaaattgtttttaattttaatttcattattctatatcatatttgctacaatttcatgcttaacttttgtagtttagtaa