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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTATTGCTAGACACTGTAATTACCTAGGGGATTTGATGCTTGCTCTCTCCTTTAGCTTACCATGTGGGATAAGgtgatttctttaactcattgcttaattatgttgatataaagttatggatatttgttatttttctaaaagaaaacgatgtcaaacatttgtattttactcaattatgcag

Basic information

species Glycine max
transcript GLYMA13G21450.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G21450.2 (Glycine max), 5'ss of exon 12
lower sequence: AT3G52940.1 (Arabidopsis thaliana), 5'ss of exon 12
GGGTATTGCTAGACACTGTAATTACCTAGGGGATTTGATGCTTGCTCTCTCCTTTAGCTTACCATGTGGGATAAGgtgatttctttaactcattgcttaattatgttgatataaagttatggatat-ttgttatttttctaaaagaaaacgatgtcaaacatttgtattttactcaattatgcag---------------------------------------------------------------------------------------
||| ||||| || |||||||||||||| || || |||||||||||||| ||||| || || |||||||| ||||||| | |||||   ||          |||     |   ||||| ||| | |   |  ||    | | |||     ||| ||  |     | |   | ||| ||  ||   |                                                                                       
GGGAATTGCAAGGCACTGTAATTACCTTGGCGACTTGATGCTTGCTCTGTCCTTCAGTTTGCCATGTGGAATAAGgtaacttcttctgcttgagttcatcttacagctaccaaaagtcatgtagaaactaataccaatatcaaaacgttcgaagttga-----tttggctgacttaaagatattgatctctaaccatcatttgaaaagtctaaagctttcaagttcatttcccaaagctgtttttatgatattttgtcttgtgtattctcag

upper sequence: GLYMA13G21450.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv08s0007g03930.t01 (Vitis vinifera), 5'ss of exon 12
GGGTATTGCTAGACACTGTAATTACCTAGGGGATTTGATGCTTGCTCTCTCCTTTAGCTTACCATGTGGGATAAGgtgatttctttaactcattgcttaattatgttgatataaagttatggatatttgttatttttctaaaagaaaacgatgtcaaacatttgtattttactcaattatgcag
||| || || || |||||||||||||| ||||| ||| || | || || |||||||| ||||| ||||||||||||| ||| ||  || ||||      | | |||||| ||   ||||   |||||    |||||  |       || | | ||     ||| || |||   ||         
GGGAATCGCAAGGCACTGTAATTACCTTGGGGACTTGTTGTTGGCACTGTCCTTTAGTTTACCTTGTGGGATAAGgtaattcct--aaatcat------actgtgttgacatg--gttac--atattcacaattttcattttg---aatgttctcttttttttctactttttgcag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294028|gb|FG987197.1|FG987197
EST:     CTAGGGGATTTGATGCTTGCTCTCTCCTTTAGCTTACCATGTGGGATAAG                         TTCACCAATTCCATACTTCTATCCAATTTATCTTCTTATTCTGTTAATCTG
genomic: CTAGGGGATTTGATGCTTGCTCTCTCCTTTAGCTTACCATGTGGGATAAGgtgatttctt ... aattatgcagTTCACCAATTCCATACTTCTATCCAATTTATCTTCTTATTCTGTTAATCTG
EST: gi|192299546|gb|FG992574.1|FG992574
EST:     CTAGGGGATTTGATGCTTGCTCTCTCCTTTAGCTTACCATGTGGGATAAG                         TTCACCAATTCCATACTTCTATCCAATTTATCTTCTTATTCTGTTAATCTG
genomic: CTAGGGGATTTGATGCTTGCTCTCTCCTTTAGCTTACCATGTGGGATAAGgtgatttctt ... aattatgcagTTCACCAATTCCATACTTCTATCCAATTTATCTTCTTATTCTGTTAATCTG
EST: gi|254340702|gb|GR854430.1|GR854430
EST:     CTAGGGGATTTGATGCTTGCTCTCTCCTTTAGCTTACCATGTGGGATAAG                         TTCACCAATTCCATACTTCTATCCAATTTATCTTCTTATTCTGTTAATCTG
genomic: CTAGGGGATTTGATGCTTGCTCTCTCCTTTAGCTTACCATGTGGGATAAGgtgatttctt ... aattatgcagTTCACCAATTCCATACTTCTATCCAATTTATCTTCTTATTCTGTTAATCTG
EST: gi|254335603|gb|GR847131.1|GR847131
EST:     CTAGGGGATTTGATGCTTGCTCTCTCCTTTAGCTTACCATGTGGGATAAG                         TTCACCAATTCCATACTTCTATCCAATTTATCTTCTTATTCTGTTAATCTG
genomic: CTAGGGGATTTGATGCTTGCTCTCTCCTTTAGCTTACCATGTGGGATAAGgtgatttctt ... aattatgcagTTCACCAATTCCATACTTCTATCCAATTTATCTTCTTATTCTGTTAATCTG