1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtattttttttccacttttgtctgtgcaccagttcagattttttctatgatgaagctaggataaacatttctttgtgtggcagtcctttattttttgtcttgtgcagaacatttgattgattgataaaattctaaattttcaatctatgatag
species | Glycine max |
transcript | GLYMA09G34390.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAG GAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCGEST: gi|209710487|gb|BW662023.1|BW662023
genomic: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtattttttt ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCG
EST: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAG GAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCGEST: gi|7146152|gb|AW508137.1|AW508137
genomic: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtattttttt ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCG
EST: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAG GAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCGEST: gi|214009173|gb|DB989889.1|DB989889
genomic: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtattttttt ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCG
EST: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAG GAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCGEST: gi|10256209|gb|BE823975.1|BE823975
genomic: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtattttttt ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCG
EST: AAATTGTACCGGATGCCCTNCTGAAATTTGGCACACATGTAAAGAAAAAG GAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCGEST: gi|7028720|gb|AW458503.1|AW458503
genomic: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtattttttt ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCG
EST: TCCTGAAATTTGGCACACATGTAAAGAAAAAG GAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCGEST: gi|10252589|gb|BE820355.1|BE820355
genomic: TCCTGAAATTTGGCACACATGTAAAGAAAAAGgtattttttt ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCG
EST: GGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAG GAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCGEST: gi|254316168|gb|GR825977.1|GR825977
genomic: GGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtattttttt ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCG
EST: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAG GAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCGEST: gi|209706566|gb|BW676114.1|BW676114
genomic: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtattttttt ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCG
EST: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAG GAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCGEST: gi|18690856|gb|BM519712.1|BM519712
genomic: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtattttttt ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCG
EST: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAG GAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCGEST: gi|31307413|gb|CD392616.1|CD392616
genomic: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtattttttt ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCG
EST: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGTAAAAG GAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCG
genomic: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtattttttt ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtattttttttccacttttgtctgtgcaccagttcagattttttctatgatgaagctaggataaacatttctttgtgtggcagtcctttattttttgtcttgtgcagaacatttgattgattgataaaattctaaattttcaatctatgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA