Sequence
atgc intronic sequence ATGC exonic sequenceCTATCAAATGCAGGAAAAAGTTAACGTGTATGGTGGAGCTGTGTCATTGGGGCATCCCTTGGGTTGCAGTGGAGCTCGCATCTTAGTCACATTATTAGGGgtaacttgtgaccttggttactttgtatatcattttctttcacccttggcacacaaattcttatacttctccagttagtattcagtatgccatgcagctgttatccattacattttataatcctggcttgattgctacactttccagatttttgtgatctgtggatatctcagccaagttgtattacag
Basic information
species | Glycine max |
transcript | GLYMA07G39870.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G39870.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv00s0531g00050.t01 (Vitis vinifera), 5'ss of exon 12
CTATCAAATGCAGGAAAAAGTTAACGTGTATGGTGGAGCTGTGTCATTGGGGCATCCCTTGGGTTGCAGTGGAGCTCGCATCTTAGTCACATTATTAGGGgtaacttgtgaccttggttactttgtatatcattttctttcacccttggcacacaaattcttatacttctccagttagtattcagtatgccatgcagctgttatccattacattttataatcctggcttgattgctacactttccagatttttgtgatctgtggatatctcagccaagttgtattacag
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-------------GAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGTTGCAGTGGTGCTCGTATCTTGGTCACATTGTTAGGGgta-----tgttcatggaagctt--------atcttggttctgcataagtcaaaagattttttt-caatacaagcaaatacttccttgacaat----tctctctctctgacctctgat-----------------------------------------------------------------------
upper sequence: GLYMA07G39870.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv18s0089g00590.t01 (Vitis vinifera), 5'ss of exon 7
CTATCAAATGCAGGAAAAAGTTAACGTGTATGGTGGAGCTGTGTCATTGGGGCATCCCTTGGGTTGCAGTGGAGCTCGCATCTTAGTCACATTATTAGGGgtaacttgtgaccttggttactttgtatatcattttctttcacccttggcacacaaattcttatacttctccagttagtattcagtatgccatgcagctgttatccattacattttataatcctggcttgattgctacactttccagatttttgtgatctgtggatatctcagccaagttgtattacag
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-------------GAAAAGGTCAATGTTCATGGTGGATCTATATCTTTGGGACATCCAATAGGTTGCAGTGGTGCTCGTATCTTGGTCACATTgttaggggta-----tattcatggcagctt--------atcttggttctgcataagctaaaagattttttt-caatacaattaaatacttcct-tgacatgcaattctctctcaa---------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19347062|gb|BM891942.1|BM891942EST: GGCATCCCTTGGGTTGCAGTGGAGCTCGCATCTTAGTCACATTATTAGGG GTATTGAGACAGAAGAGAGGGAAGTATGGTG
genomic: GGCATCCCTTGGGTTGCAGTGGAGCTCGCATCTTAGTCACATTATTAGGGgtaacttgtg ... tgtattacagGTATTGAGACAGAAGAGAGGGAAGTATGGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTATCAAATGCAGGAAAAAGTTAACGTGTATGGTGGAGCTGTGTCATTGGGGCATCCCTTGGGTTGCAGTGGAGCTCGCATCTTAGTCACATTATTAGGGgtaacttgtgaccttggttactttgtatatcattttctttcacccttggcacacaaattcttatacttctccagttagtattcagtatgccatgcagctgttatccattacattttataatcctggcttgattgctacactttccagatttttgtgatctgtggatatctcagccaagttgtattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT