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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGCAGCAAACTGGCCCCCTGTAATGCAAATAGTTCGGCTTATATCTCAGGACCACATGAATAACAAgtaattccttatttcaacttttttcatgctcatctctctttcagactgtgtgtattggtccttaacattttgttctgctgctag

Basic information

species Glycine max
transcript GLYMA02G10880.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10880.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G25540.2 (Arabidopsis thaliana), 5'ss of exon 11
ACTTGCAGCAAACTGGCCCCCTGTAATGCAAATAGTTCGGCTTATATCTCAGGACCACATGAATAACAAgtaattccttatttcaacttttttcatgctcatctctctttcagactgtgtgtattggtcct-taacattttgttctgctgctag-----------
  | |||||||||||||| ||    ||||| || ||||| || ||||| |||||||| ||||||||||||||||  |||  | | |  |  ||| |  |      |   |||    |||  | ||| |    |  || |   |  | |  ||             
GTTGGCAGCAAACTGGCCACCAACTATGCAGATTGTTCGTCTCATATCCCAGGACCATATGAATAACAAgtaatatcttcgtgctatatccttccttattccaaatggctcatgg-gtggatgttgatttcatgccactaaatatttcacctgactttgcatcag

upper sequence: GLYMA02G10880.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv01s0011g03160.t01 (Vitis vinifera), 5'ss of exon 11
ACTTGCAGCAAACTGGCCCCCTGTAATGCAAATAGTTCGGCTTATATCTCAGGACCACATGAATAACAAgtaattccttatttcaacttttttcatgctcatctctct---ttcagactgtgtgtattggtccttaacatt---ttgttctgctgctag----------
 |||||||||||||||||  |    ||||||||||| ||||||||||| ||||||||||||||||||||||| |  ||  ||   | |  | |  |||   |   | |         |||  | | ||     |  |  ||   ||| | |  |  ||           
GCTTGCAGCAAACTGGCCTGCGACGATGCAAATAGTACGGCTTATATCCCAGGACCACATGAATAACAAgtactctctgtttagtattcctgttttgcgtctaattgtaaacatgctctgcctttcttatatttctaagttccattgatttctttttatttaatatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820645|gb|BE556155.1|BE556155
EST:     CCTGTAATGCAAATAGTTCGGCTTATATCTCAGGACCACATGAATAACAA                         ACAATATGTAGGAAAGGCAGATTTCCTAGTTTTTCGGGCAATGAACCCACA
genomic: CCTGTAATGCAAATAGTTCGGCTTATATCTCAGGACCACATGAATAACAAgtaattcctt ... ctgctgctagACAATATGTAGGAAAGGCAGATTTCCTAGTTTTTCGGGCAATGAACCCACA
EST: gi|6915619|gb|AW397149.1|AW397149
EST:     CCTGTAATGCAAATAGTTCGGCTTATATCTCAGGACCACATGAATAACAA                         ACAATATGTAGGAAAGGCAGATTTCCTAGTTTTTCGGGCAATGAACCCACA
genomic: CCTGTAATGCAAATAGTTCGGCTTATATCTCAGGACCACATGAATAACAAgtaattcctt ... ctgctgctagACAATATGTAGGAAAGGCAGATTTCCTAGTTTTTCGGGCAATGAACCCACA