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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAAGAAATTATTGTTCAGTTCAAAGGGAGCTTTGTGCTAGAATTGCAGCAGAGGGCTATTGAATTCAGTTCGATTATTTCAAAGCATCAAAATATTAGgtgaggttaattaatctgctttttatattgtatcaagatcacggaattgtacaacactttcataagaaactgtcattgtgcag

Basic information

species Glycine max
transcript GLYMA02G03800.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03800.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G030144_T03 (Zea mays), 5'ss of exon 12
TCAAAGAAATTATTGTTCAGTTCAAAGGGAGCTTTGTGCTAGAATTGCAGCAGAGGGCTATTGAATTCAGTTCGATTATTTCAAAGCATCAAAATATTAGgtga--ggttaattaatctgctttttatattgtatcaagatcacggaattgtac-------aacactttcataagaaa--ctgtcat-tgtgcag
| ||||||||  |||  ||    |||||||    |||||| ||||||||||| ||  |||||||||||||||| |||||   ||  ||||||   || | ||||  ||   ||    |   | || |   |   |    ||  || | || |         || | |   ||    ||  |||   | || ||||
TAAAAGAAATAGTTGCGCAAAATAAAGGGAATACTGTGCTTGAATTGCAGCAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAATCGATGAAgtgagtggaagatcttgcaattattgaggataattttgtattccgtagttttgtcaaagaaaatagtaatatggataatgctggtgtatgcgcag

upper sequence: GLYMA02G03800.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G017421_T01 (Zea mays), 5'ss of exon 13
TCAAAGAAATTATTGTTCAGTTCAAAGGGAGCTTTGTGCTAGAATTGCAGCAGAGGGCTATTGAATTCAGTTCGATTATTTCAAAGCATCAAAATATTAGgtga--ggttaattaatctgctttttatattgtatcaagatcacggaattgtacaacactttcataagaaactgtcat-tgtgcag
| ||||||||  |||  ||    |||||||    |||||| ||||||||||| ||  |||||||||||||||| |||||   ||  |||||    || | ||||  ||   |||   |   | || |   |   |    ||  |  | ||   |||       ||||    |||   | || ||||
TAAAAGAAATAGTTGCGCAAAATAAAGGGAATACTGTGCTTGAATTGCAGCAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAGTCGATAAAgtgagtggcagattctgcaattattgaggatcattttgtattccatagtttgtcaaagtgaggataatg--ctggtgtatgcgcag

upper sequence: GLYMA02G03800.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv01s0026g00310.t01 (Vitis vinifera), 5'ss of exon 13
TCAAAGAAATTATTGTTCAGTTCAAAGGGAGCTTTGTGCTAGAATTGCAGCAGAGGGCTATTGAATTCAGTTCGATTATTTCAAAGCATCAAAATATTAGgtgaggttaattaatctgctttttatattgtatcaagatcacggaattgtacaacactttcataagaaactgtcat-tgtgcag-----------------------------------------
| |  || || ||||| ||||  ||||| ||| ||||||| ||||||||||||||  | |||||||| | ||| ||||||   |||||||||||||| ||||  |   | || |      |  ||| ||||||||      | |   |  |   |  || |  |  ||  || ||  |||  ||                                         
TAAGGGATATAATTGTCCAGTGTAAAGGAAGCCTTGTGCTTGAATTGCAGCAGAGATCCATTGAATTTAATTCCATTATTGGGAAGCATCAAAATATCAGgtatg--catttgaaagttgtaatattttgtatca----ttcagtgcttgatgtcttttccccagaaatttgccacatgtaaagcatatccatcttttaaagaagttctggatgaatgtctacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208311741|gb|GE109019.1|GE109019
EST:     TATTGAATTCAGTTCGATTATTTCAAAGCATCAAAATATTAG                         GTCTACACTTGTAGAAAGGATGCCAGTTTTGGATGAGGCAACTTACATTGG
genomic: TATTGAATTCAGTTCGATTATTTCAAAGCATCAAAATATTAGgtgaggttaa ... cattgtgcagGTCTACACTTGTAGAAAGGATGCCAGTTTTGGATGAGGCAACTTACATTGG