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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTAGTTATAATCCCATTGGACCAGACGGAGCCAAGGCCTTGGCTGAAGTTCTCAAGTTTCATGGGAACATAAAAACCCTTAAGCTTGGTTGGTGCCAGgtaaccttttcaccatgaattacctgtaaattatttgtaataacttttatttgtaacattgaataactttatag

Basic information

species Glycine max
transcript GLYMA02G03410.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03410.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os06g13050.1 (Oryza sativa), 5'ss of exon 14
ACTTAGTTATAATCCCATTGGACCAGACGGAGCCAAGGCCTTGGCTGAAGTTCTCAAGTTTCATGGGAACATAAAAACCCTTAAGCTTGGTTGGTGCCAGgtaaccttttcaccatgaattacctgtaaatt---atttgtaataacttttatttgtaacattgaataactttatag
  | || |||||||| ||||| ||||| || |  |||||  |   ||| |||||||||||  ||||||| ||  |||||||||| ||||||||||||||||||| |||   | |   |   |   |   ||    ||||    ||  |  | ||        | |   | |||  ||
GTTGAGCTATAATCCGATTGGGCCAGAGGGGGTAAAGGCTCTTTGTGATGTTCTCAAGTTCAATGGGAAAATCCAAACCCTTAAACTTGGTTGGTGCCAGgtaatcttcataactgaatggaatcgcggatgcagatttaagttatatcctcttcagcctggttacatattttgcag

upper sequence: GLYMA02G03410.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G110289_T01 (Zea mays), 5'ss of exon 13
ACTTAGTTATAATCCCATTGGACCAGACGGAGCCAAGGCCTTGGCTGAAGTTCTCAAGTTTCATGGGAACATAAAAACCCTTAAGCTTGGTTGGTGCCAGgtaaccttttcacc---atg-aattacctgta-aattatttgtaat--aacttttatttgtaacattgaataactttatag
  | || || ||||| |||||| |||||||||  ||||| |||   || || |||||||| |||||||| ||  ||||||||||||| || ||||||||||| ||| |   | |   ||| |||||   |   | || |     ||  || | || |    |   ||| ||||| |   ||
TTTGAGCTACAATCCAATTGGATCAGACGGAGTAAAGGCTTTGTGCGATGTCCTCAAGTTCCATGGGAAGATCCAAACCCTTAAGCTCGGCTGGTGCCAGgtgaccctcagaaccgaatggaattatacgagcagttttgcaccatttaagtgttctcaccagagttgcataacct-gcag

upper sequence: GLYMA02G03410.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv01s0026g00610.t01 (Vitis vinifera), 5'ss of exon 13
ACTTAGTTATAATCCCATTGGACCAGACGGAGCCAAGGCCTTGGCTGAAGTTCTCAAGTTTCATGGGAACATAAAAACCCTTAAGCTTGGTTGGTGCCAGgtaaccttttcaccatgaattacctgta-----aattatttgtaataacttttatttgtaacattgaata-actttatag
| |  ||||||||||||| || || || ||||| ||||| ||  |||||||||| |||||||||||||| || |||||||| |||||||||||||| ||||||| ||         | |||   |  |     ||   ||    ||  |||| ||    || | || | | |  ||  ||
ATTAGGTTATAATCCCATAGGGCCTGAAGGAGCAAAGGCTTTATCTGAAGTTCTGAAGTTTCATGGGAAGATCAAAACCCTGAAGCTTGGTTGGTGTCAGgtaatctagatgatgcggattggttaaagtcctaaagcttgaccatttctttgatagtgaataatggaaatatcttgcag