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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAGATTGCTATAAAACGCCATGCATCAGATCTTACCACAAAATCGATGGCTTTGGTTGCACTATTAAAGCTCTCTTCACGTTTCCCTTCATGTTCAGAgtatgatctgtttttcaaatggtttattatctattacacacaccacaacgtaaattggagtttgccaagaaccatttggctcaaaagcttaagtttggtg...

Basic information

species Glycine max
transcript GLYMA01G03890.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209707485|gb|BW664944.1|BW664944
EST:     GCTTTGGTTGCACTATTAAAGCTCTCTTCACGTTTCCCTTCATGTTCAGA                         GAGGATCAAAGAAATTATTGTTCAGTTCAAAGGGAGCTTTGTGCTAGAATT
genomic: GCTTTGGTTGCACTATTAAAGCTCTCTTCACGTTTCCCTTCATGTTCAGAgtatgatctg ... atggatatagGAGGATCAAAGAAATTATTGTTCAGTTCAAAGGGAGCTTTGTGCTAGAATT
EST: gi|208139507|gb|GD934269.1|GD934269
EST:     GCTTTGGTTGCACTATTAAAGCTCTCTTCACGTTTCCCTTCATGTTCAGA                         GAGGATCAAAGAAATTATTGTTCAGTTCAAAGGGAGCTTTGTGCTAGAATT
genomic: GCTTTGGTTGCACTATTAAAGCTCTCTTCACGTTTCCCTTCATGTTCAGAgtatgatctg ... atggatatagGAGGATCAAAGAAATTATTGTTCAGTTCAAAGGGAGCTTTGTGCTAGAATT
EST: gi|213606433|gb|DB962998.1|DB962998
EST:     GCTTTGGTTGCACTATTAAAGCTCTCTTCACGTTTCCCTTCATGTTCAGA                         GAGGATCAAAGAAATTATTGTTCAGT
genomic: GCTTTGGTTGCACTATTAAAGCTCTCTTCACGTTTCCCTTCATGTTCAGAgtatgatctg ... atggatatagGAGGATCAAAGAAATTATTGTTCAGT
EST: gi|17518713|gb|BM187755.1|BM187755
EST:     GCTTTGGTTGCACTATTAAAGCTCTCTTCACGTTTCCCTTCATGTTCAGA                         GAGGATCAAAGAAATTATTGTTCAGTTCAAAGGGAGCTTTGTGCTAGAATT
genomic: GCTTTGGTTGCACTATTAAAGCTCTCTTCACGTTTCCCTTCATGTTCAGAgtatgatctg ... atggatatagGAGGATCAAAGAAATTATTGTTCAGTTCAAAGGGAGCTTTGTGCTAGAATT