1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGACTTGCTGGGGAGCTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtctattttcttttccactttatctatgcaccagtttagattttttctatgatggagctaggataaacatttcgttgttttggcaatcctttaactcttgtcttgtgcaaaacatttgattgattgataaaactataaattttcaatctatgatag
species | Glycine max |
transcript | GLYMA01G01390.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAG GAGTCCAAACTTTATGGGGCACACTTCAAGGAAATTCCTGTTGATGCTCCAEST: gi|193327363|gb|FK293832.1|FK293832
genomic: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtctattttc ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATTCCTGTTGATGCTCCA
EST: ACACATGTAAAGAAAAAG GAGTCC-AAC-TTAT-GGGCACACTTCAAGGAAATTCCTGTTGATGCTCCAEST: gi|208096077|gb|GD892485.1|GD892485
genomic: ACACATGTAAAGAAAAAGgtctattttc ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATTCCTGTTGATGCTCCA
EST: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAG GAGTCCAAACTTTATGGGGCACACTTCAAGGAAATTCCTGTTGATGCTCCAEST: gi|16277496|gb|BI942413.1|BI942413
genomic: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtctattttc ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATTCCTGTTGATGCTCCA
EST: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAG GAGTCCAAACTTTATGGGGCACACTTCAAGGAAATTCCTGTTGATGCTCCAEST: gi|193397874|gb|FK363768.1|FK363768
genomic: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtctattttc ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATTCCTGTTGATGCTCCA
EST: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAG GAGTCCAAACTTTATGGGGCACACTTCAAGGAAATTCCTGTTGATGCTCCAEST: gi|193593828|gb|FK548422.1|FK548422
genomic: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtctattttc ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATTCCTGTTGATGCTCCA
EST: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAG GAGTCCAAACTTTATGGGGCACACTTCAAGGAAATTCCTGTTGATGCTCCAEST: gi|9983884|gb|BE657992.1|BE657992
genomic: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtctattttc ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATTCCTGTTGATGCTCCA
EST: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAG GAGTCCAAACTTTATGGGGCACACTTCAAGGAAATTCCTGTTGATGCTCCAEST: gi|58022098|gb|CX708839.1|CX708839
genomic: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtctattttc ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATTCCTGTTGATGCTCCA
EST: AAATTGTACCGGATGCCCTCNTGAAATTTGGCACACATGTAAAGAAAAAG GAGTCCAAACTTTATGGGGCACACTTCAAGGAAATTCCTGTTGATGCTCCA
genomic: AAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtctattttc ... tctatgatagGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATTCCTGTTGATGCTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTTGCTGGGGAGCTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGgtctattttcttttccactttatctatgcaccagtttagattttttctatgatggagctaggataaacatttcgttgttttggcaatcctttaactcttgtcttgtgcaaaacatttgattgattgataaaactataaattttcaatctatgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA