Sequence
atgc intronic sequence ATGC exonic sequenceAAGAAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCATTGCCAGAGTGAACTACAAGAAACATGGTTTGGGGATGATTCTCCAAGAATAAACAATAAGgtaccaatcttactccttgacagaaagacacgatgataaacctgtttattttgtgtgcaattttaactaatatgtcgggaacatttatattgtgtaaagt...
Basic information
species | Glycine max |
transcript | GLYMA20G29930.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G29930.2 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os10g40290.1 (Oryza sativa), 5'ss of exon 10
AAGAAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCATTGCCAGAGTGAACTACAAGAAACATGGTTTGGGGATGATTCTCCAAGAATAAACAATAAGgtaccaatcttactccttgacagaaagacacgatgataaacctgtttattttgtgtgcaattttaactaatatgtcgggaacatttatattgtgtaaagt
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ACAGGGTGTAGGGATGTTCATAAATTCTTGTTTTGCACATTGCCAGAGTGAGCTGCAGGAAACATGGTTAGCACCAAATTCGCCCAGGTTGCATAACAAGgtactggc---aatct---acatgaaaatgttgtgtatatgcggtgtatttgcag---------------------------------------------
upper sequence: GLYMA20G29930.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv16s0050g00570.t01 (Vitis vinifera), 5'ss of exon 11
AAGAAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCATTGCCAGAGTGAACTACAAGAAACATGGTTTGGGGATGATTCTCCAAGAATAAACAATAAGgtacc--aatcttactccttgacagaaa--gacacgatgataaacctgtttattttgtgtgcaattttaactaatatgtcgggaacatttatattgtgtaaagt
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AAGAAGAGGAGGGATGTTTATAAATTCATGCTTTGCTCATTGCCAAAGTGAGTCACAAGACACATGGCTGGCAATTGACTCCCCAAGGGTGAACAATAAGgtatttaaatttaagtcattgccttcatttgtattgttgttggcttccattatctaccactagattaagtttaaaaagtatgcaactaagatagttaatg----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192302798|gb|FG998480.1|FG998480EST: AACTACAAGAAACATGGTTTGGGGATGATTCTCCAAGAATAAACAATAAG ACTATTGCAGAAGCGATTGGTGATTGGTATTTTAATAGAAACATAAGCAAG
genomic: AACTACAAGAAACATGGTTTGGGGATGATTCTCCAAGAATAAACAATAAGgtaccaatct ... tcttttacagACTATTGCAGAAGCGATTGGTGATTGGTATTTTAGTAGAAACATAAGCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGAAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCATTGCCAGAGTGAACTACAAGAAACATGGTTTGGGGATGATTCTCCAAGAATAAACAATAAGgtaccaatcttactccttgacagaaagacacgatgataaacctgtttattttgtgtgcaattttaactaatatgtcgggaacatttatattgtgtaaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA