1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATGtattacctttacttaagagttatgactattgtttggtcttactagtaatttcataatagtgataaatatttgtctttattaatttcaga
species | Glycine max |
transcript | GLYMA18G04360.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATA AATACCCAGACAACCTTGAGATTGCTGCGGAACTTGCAGTGTCAAGCTTGCEST: gi|22929873|gb|BU547012.1|BU547012
genomic: GAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATGtattaccttt ... taatttcagaAATACCCAGACAACCTTGAGATTGCTGCGGAACTTGCAGTGTCAAGCTTGC
EST: GAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATA AATACCCAGACAACCTTGAGATTGCTGCGGAACTTGCAGTGTCAAGCTTGCEST: gi|207686936|gb|GD670464.1|GD670464
genomic: GAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATGtattaccttt ... taatttcagaAATACCCAGACAACCTTGAGATTGCTGCGGAACTTGCAGTGTCAAGCTTGC
EST: GAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATA AATACCCAGACAACCTTGAGATTGCTGCGGAACTTGCAGTGTCAAGEST: gi|193510785|gb|FK471259.1|FK471259
genomic: GAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATGtattaccttt ... taatttcagaAATACCCAGACAACCTTGAGATTGCTGCGGAACTTGCAGTGTCAAG
EST: GAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATA AATACCCAGACAAEST: gi|208102897|gb|GD900887.1|GD900887
genomic: GAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATGtattaccttt ... taatttcagaAATACCCAGACAA
EST: GAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATA AATACCCAGACAACCTTGAGATTGCTGCGGAACTTGCAGTGTCAAEST: gi|22541669|gb|BU091512.1|BU091512
genomic: GAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATGtattaccttt ... taatttcagaAATACCCAGACAACCTTGAGATTGCTGCGGAACTTGCAGTGTCAA
EST: GAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATA AATACCCAGACAACCTTGAGATTGCTGCGGAACTTGCAGTGTCAAGCTTGCEST: gi|192332258|gb|FK023907.1|FK023907
genomic: GAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATGtattaccttt ... taatttcagaAATACCCAGACAACCTTGAGATTGCTGCGGAACTTGCAGTGTCAAGCTTGC
EST: GAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATA AATACCCAGACAACCTTGAGATTGCTGCGGAACTTGCAGTGTCAAGCTTGC
genomic: GAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATGtattaccttt ... taatttcagaAATACCCAGACAACCTTGAGATTGCTGCGGAACTTGCAGTGTCAAGCTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATGtattacctttacttaagagttatgactattgtttggtcttactagtaatttcataatagtgataaatatttgtctttattaatttcaga
- - GGAGAT
- - - GAGATC
- - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - GGAGCA