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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGTGCAGCAGATTATATTGCAGTAGCTGAAAACTTTCACACGGTTTTCATATCTGACATTCCAGTAATGAGTATGCGCATCCGTGACAAGgtatttatcagtacaaataagttcagtttgccccatatgtagtgataactgcctaattttttgttgcaaaatatatcagaaacttgctttcttactctgt...

Basic information

species Glycine max
transcript GLYMA17G31700.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G31700.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G115372_T01 (Zea mays), 5'ss of exon 12
TTGGGTGCAGCAGATTATATTGCAGTAGCTGAAAACTTTCACACGGTTTTCATATCTGACATTCCAGTAATGAGTATGCGCATCCGTGACAAGgtatttatcagtacaaataagttcagtttgccccatatgtagtgataactgcctaattttttgttgcaaaatatatcagaaacttgctttcttactctgt-
 | || |||||||||||||| ||| |||||   ||||  || ||  |||||||||| || |||||||  |||||||||   |||||||||||||||||| |    |    |  |||   |    |    |    ||     | |   || |   ||      || ||    | | |   ||    | |   || 
GTCGGAGCAGCAGATTATATAGCAATAGCTAGGAACTACCATACAATTTTCATATCAGAAATTCCAGCGATGAGTATGAAGATCCGTGACAAGgtatttcttcacatgc-tgggttttctgcttctttcagtcggtttgggcagaggaaataggtggaagggaacatgaacgtagcaatctggacttcaaagtt

upper sequence: GLYMA17G31700.1 (Glycine max), 5'ss of exon 11
lower sequence: AT2G25530.1 (Arabidopsis thaliana), 5'ss of exon 11
-------TTGGGTGCAGCAGATTATATTGCAGTAGCTGAAAACTTTCACACGGTTTTCATATCTGACATTCCAGTAATGAGTATGCGCATCCGTGACAAGgtatttatcagtacaaataagttcagtttgccccatatgtagtgataactgcctaattttttgttgcaaaatatatcagaaacttgctttcttactctgt
        | ||||||||||||||||| ||||| ||  |||||| ||| ||  |||| |||||||| ||||||| |||||| |||   || || ||||||||||  |  |  |  || |  |   | ||     || | |  ||||  || |||  |      ||   |  | ||||||                     
TCGACCGGTAGGTGCAGCAGATTATATCGCAGTGGCCAAAAACTATCATACAATTTTTATATCTGATATTCCAGCAATGAGCATGGAGATACGCGACAAGgtata-actaaaatcaagatttatggctt--ttgatgtttgctgattccttcctcttaaggacttttgatgt-tatcag---------------------

upper sequence: GLYMA17G31700.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv04s0008g05270.t01 (Vitis vinifera), 5'ss of exon 11
TTGGGTGCAGCAGATTATATTGCAGTAGCTGAAAACTTTCACACGGTTTTCATATCTGACATTCCAGTAATGAGTATGCGCATCCGTGACAAGgtatttatcagtacaaataagttcagtttgccccatatgtagtgataactgcctaattttttgttgcaaaatatatcagaaacttgctttcttactctgt------
 ||||||||||||| ||||||||||||||| |||||| |||||| ||||| |||||||||||||| || ||||||||||| || ||||||||||||        |||   |  | | || || || |  |  | |||  ||     ||| |   |       | |||  ||||||  |   |  |     |||      
GTGGGTGCAGCAGACTATATTGCAGTAGCTAAAAACTATCACACTGTTTTTATATCTGACATTCCTGTGATGAGTATGCGTATTCGTGACAAGgtaa-----gctactcttgtgctaagatttccaccaaaat-gtgccaatgttataactaaattggaatgattatcacagaaatctaggtgttggaaatgttatatg