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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTTCCTACATCGTCAAATGTTACAATTGTGGCCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAGgtatgcttcacatgtccgctccaacataatattgctcagtgtttctctattcttattctagtagaaatattttgccttaaaagagaagtggaactacttt...

Basic information

species Glycine max
transcript GLYMA16G24290.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254323221|gb|GR840026.1|GR840026
EST:     CCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAG                         GTAATGAGAAAAACTGCACCTCTCCTGATGCAGTTCACAAAGTAAGGCAAA
genomic: CCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAGgtatgcttca ... ttcttttcagGTAATGAGAAAAACTGCACCTCTCCTGATGCAGTTCACAAAGTAAGGCAAA
EST: gi|163918185|gb|EH039901.1|EH039901
EST:     CCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAG                         GTAATGAGAAAAACTGCACCTCTCCTGATGCAGTTCACAAAGTAAGGCAAA
genomic: CCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAGgtatgcttca ... ttcttttcagGTAATGAGAAAAACTGCACCTCTCCTGATGCAGTTCACAAAGTAAGGCAAA
EST: gi|193393943|gb|FK358074.1|FK358074
EST:     CCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAG                         GTAATGAGAAAAACTGCACCTCT
genomic: CCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAGgtatgcttca ... ttcttttcagGTAATGAGAAAAACTGCACCTCT
EST: gi|254333270|gb|GR850520.1|GR850520
EST:     CCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAG                         GTAATGAGAAAAACTGCACCTCTCCTGATGCAGTTCACAAAGTAAGGCAAA
genomic: CCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAGgtatgcttca ... ttcttttcagGTAATGAGAAAAACTGCACCTCTCCTGATGCAGTTCACAAAGTAAGGCAAA
EST: gi|254333269|gb|GR850519.1|GR850519
EST:     CCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAG                         GTAATGAGAAAAACTGCACCTCTCCTGATGCAGTTCACAA-GTAAGGCAAA
genomic: CCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAGgtatgcttca ... ttcttttcagGTAATGAGAAAAACTGCACCTCTCCTGATGCAGTTCACAAAGTAAGGCAAA
EST: gi|192318972|gb|FK010592.1|FK010592
EST:     CCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAG                         GTAATGAGAAAAACTGCACCTCTCCTGATGCAGTTCACAAAGTAAGGCAAA
genomic: CCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAGgtatgcttca ... ttcttttcagGTAATGAGAAAAACTGCACCTCTCCTGATGCAGTTCACAAAGTAAGGCAAA
EST: gi|192318971|gb|FK010591.1|FK010591
EST:     CCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAG                         GTAATGAGAAAAACTGCACCTCTCCTGATGCAGTTCACAAAGTAAGGCAAA
genomic: CCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAGgtatgcttca ... ttcttttcagGTAATGAGAAAAACTGCACCTCTCCTGATGCAGTTCACAAAGTAAGGCAAA
EST: gi|7283900|gb|AW596501.1|AW596501
EST:     CCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAG                         GTAATGAGAAAAACTGCACCTCTCCTGATGCAGTTCACAAAGTAAGGCAAA
genomic: CCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAGgtatgcttca ... ttcttttcagGTAATGAGAAAAACTGCACCTCTCCTGATGCAGTTCACAAAGTAAGGCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCCTTCCTACATCGTCAAATGTTACAATTGTGGCCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAGgtatgcttcacatgtccgctccaacataatattgctcagtgtttctctattcttattctagtagaaatattttgccttaaaagagaagtggaactacttt

- - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaga