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TACTGAAGTTCCCTCGTATTTTTGATCCATGGGGTGGTTACAGCATCATAGGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttcctccctcctttctaccccttatcccttgcatgacttatgtcaacccaaaatttgatttgaataacaaggtccaaattttatggattggaa...
species | Glycine max |
transcript | GLYMA11G02540.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAG GTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTTCTTGTGGGCEST: gi|254328593|gb|GR832965.1|GR832965
genomic: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttc ... gtttttgcagGTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
EST: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAG GTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTTCTTGTGGGCEST: gi|254324665|gb|GR834090.1|GR834090
genomic: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttc ... gtttttgcagGTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
EST: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAG GTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTTCTTGTGGGCEST: gi|254341537|gb|GR852674.1|GR852674
genomic: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttc ... gtttttgcagGTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
EST: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAG GTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTTCTTGTGGGCEST: gi|254328592|gb|GR832964.1|GR832964
genomic: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttc ... gtttttgcagGTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
EST: GGTTTTGGAGACATCCTTTTACCAG-AATGCTGGTGGCATTCTCACTCAG GTACGATTGGCTGGCAA-TAAGAGCCTTAGAAGTGGATATTTTCTTGGGGGEST: gi|6666717|gb|AW278176.1|AW278176
genomic: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttc ... gtttttgcagGTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTT-CTTGTGGG
EST: GGTTTTGCAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAG GTACGATTGGCTGGCAAATCAGAGCCTTACAAGTGGATATTTCTTGTGGGCEST: gi|254324666|gb|GR834091.1|GR834091
genomic: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttc ... gtttttgcagGTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
EST: GTTTTGGGAGACATCC-TTTACCAGGAATGCTGGTGGCATTCTCACTCAG GTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTTCTTGTGGGCEST: gi|208298780|gb|GE091405.1|GE091405
genomic: GTTTT-GGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttc ... gtttttgcagGTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
EST: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAG GTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTTCTTGTGGGCEST: gi|214004354|gb|DB989359.1|DB989359
genomic: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttc ... gtttttgcagGTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
EST: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGTTGGCATTCCCACTCAG GTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATAATTCTTGTGGGCEST: gi|208113746|gb|GD911651.1|GD911651
genomic: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttc ... gtttttgcagGTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
EST: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAG GTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTTCTTGTGGGCEST: gi|192310357|gb|FK002237.1|FK002237
genomic: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttc ... gtttttgcagGTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
EST: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAG GTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
genomic: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttc ... gtttttgcagGTACGATTGGCTGGCAAATAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTGAAGTTCCCTCGTATTTTTGATCCATGGGGTGGTTACAGCATCATAGGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttcctccctcctttctaccccttatcccttgcatgacttatgtcaacccaaaatttgatttgaataacaaggtccaaattttatggattggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacccc