Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCTCTTCTTACTGCTGAATCACGTGCTATTTCTGGAAAAAAAGGGATCCATTCTGCCAAGGATTCTCCAGCCATGCATATAACTGACTTGACCACAgtgagaaaaatgttaattgtactatttaacttttactctgaaacattcttaaatcttttccccacttttgattcattttag

Basic information

species Glycine max
transcript GLYMA08G00910.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G00910.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G07350.1 (Arabidopsis thaliana), 5'ss of exon 11
TGATGCTCTTCTTACTGCTGAATCACGTGCTATTTCTGGAAAAAAAGGGATCCATTCTGCCAAGGATTCTCCAGCCATGCATATAACTGACTTGACCACAgtgagaaaaatgttaattgtac-tatttaacttttactctgaaacattcttaaatcttttccccac--ttttgattcattttag-----------------------
||||||||||||  |||||||| | |||||| |  ||||||| ||||| ||||||||||| || || |||||||||||||| || || ||| | ||    || || | |    ||  | ||  ||| || ||     |    || |  |  |  |   |     ||  |||||| | || | |                        
TGATGCTCTTCTGGCTGCTGAAGCTCGTGCTCTGGCTGGAAAGAAAGGAATCCATTCTGCAAAAGAATCTCCAGCCATGCACATCACAGACCTAACTGTGgttagtatatatatatatatatatatatatctccatgtacataataaacgcattttcctcattaacctttttgactaatctaatgtgtaaccatatatttgtctcag

upper sequence: GLYMA08G00910.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 10
TGATGCTCTTCTTACTGCTGAATCACGTGCTATTTCTGGAAAAAAAGGGATCCATTCTGCCAAGGATTCTCCAGCCATGCATATAACTGACTTGACCACAgtgagaaaaatgttaattgtac---tatttaactt--ttactctgaaacattcttaaatcttttccc--cacttttgattcattttag-------
|||||| || ||  | |||||||||||||| ||| |||| || ||||| ||||||||||| |||||||||||||  |||||||| || ||| |    || || ||||| | |  | |||||    ||||| | ||  ||  |  |  | |   |||| |  |||  |    ||| | ||   ||  |        
TGATGCCCTCCTGGCAGCTGAATCACGTGCCATTGCTGGGAAGAAAGGAATCCATTCTGCAAAGGATTCTCCAGTGATGCATATTACAGACCTTGTAACGgttagaaata-gaaacttgtatatttatttgagttccttctttcgtgaaagggttaatttgtttttcagtgcttctaatgacttgcatatctcag

upper sequence: GLYMA08G00910.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 11
TGATGCTCTTCTTACTGCTGAATCACGTGCTATTTCTGGAAAAAAAGGGATCCATTCTGCCAAGGATTCTCCAGCCATGCATATAACTGACTTGACCACAgtgagaa----aaatgttaattgtactatttaacttttactctgaaacattcttaaatcttttccccact-tttgattcattttag------------
||||||||| ||| |||||||||| |||||||||||||| | |||||| ||||||||||| |||||| ||||||  ||||||||||| ||||||   |  || ||||     ||   ||| | |  |  |  | | ||    ||| | | |    ||   |     |||| | |  || ||   |             
TGATGCTCTCCTTGCTGCTGAATCGCGTGCTATTTCTGGGAGAAAAGGAATCCATTCTGCAAAGGATCCTCCAGTGATGCATATAACAGACTTGCTTATGgttagaattctgaaatataactcttatgctggattcttttcttgatataattgccaactataaattcactgtctcttttatgaaaatgtctatttcag