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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCTCTTCTTGCTGCTGAATCACGTGCAATTTCTGGAAGGAAAGGCACCCACTCTGCCAAGGATCCTCCAGTGATGCATATAACTGATTTGACCACGgtaaaaaaatagttacatgaacttttgtttctacaccaaagcttataaataactcaaacatgtaactcctttgactcatattag

Basic information

species Glycine max
transcript GLYMA06G17050.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17050.3 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 10
TGATGCTCTTCTTGCTGCTGAATCACGTGCAATTTCTGGAAGGAAAGGCACCCACTCTGCCAAGGATCCTCCAGTGATGCATATAACTGATTTGACCACGgtaaaaaaatagttacatgaacttttgtttctacaccaaagcttataaataactcaa---acatgtaactcctt----tgactcatattag----
|||||| || || || |||||||||||||| ||| |||| | |||||| | ||| ||||| |||||| |||||||||||||||| || ||  |    ||||| | ||| |||  || || |  ||| |||     ||     |  | ||    | ||      | | | | |||    |||||   ||       
TGATGCCCTCCTGGCAGCTGAATCACGTGCCATTGCTGGGAAGAAAGGAATCCATTCTGCAAAGGATTCTCCAGTGATGCATATTACAGACCTTGTAACGgttagaaa-tagaaacttgtatatttatttgagttccttctttcgtgaaagggttaatttgtttttcagtgcttctaatgacttgcatatctcag

upper sequence: GLYMA06G17050.3 (Glycine max), 5'ss of exon 11
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 11
TGATGCTCTTCTTGCTGCTGAATCACGTGCAATTTCTGGAAGGAAAGGCACCCACTCTGCCAAGGATCCTCCAGTGATGCATATAACTGATTTGACCACGgtaaaaaaatagttacatgaacttttgtttctacaccaaagcttataaataactcaaacatgtaactcctttgactcatattag----------------
||||||||| |||||||||||||| ||||| |||||||| || ||||| | ||| ||||| |||||||||||||||||||||||||| || |||   | ||| | ||    |  | || |||| || |  ||  |        |  | |||| |   |  | ||| | |  || ||| | |  |                
TGATGCTCTCCTTGCTGCTGAATCGCGTGCTATTTCTGGGAGAAAAGGAATCCATTCTGCAAAGGATCCTCCAGTGATGCATATAACAGACTTGCTTATGgttagaattctgaaatat-aactcttatg-ctggattcttttcttgatataattgccaactataaattcactgtctcttttatgaaaatgtctatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301191|gb|FG990171.1|FG990171
EST:     CCCACTCTGCCAAGGATCCTCCAGTGATGCATATAACTGATTTGACCACG                         GCATCGGCTAAGAAAGCCAGAGACTTCTTGCCTTTCCTGCACCGAAGTAGA
genomic: CCCACTCTGCCAAGGATCCTCCAGTGATGCATATAACTGATTTGACCACGgtaaaaaaat ... ctcatattagGCATCGGCTAAGAAAGCCAGAGACTTCTTGCCTTTCCTGCACCGAAGTAGA
EST: gi|254336635|gb|GR842814.1|GR842814
EST:     CCCACTCTGCCAAGGATCCTCCAGTGATGCATATAACTGATTTGACCACG                         GCATCGGCTAAGAAAGCCAGAGACTTCTTGCCTTTCCTGCACCGAAGTAGA
genomic: CCCACTCTGCCAAGGATCCTCCAGTGATGCATATAACTGATTTGACCACGgtaaaaaaat ... ctcatattagGCATCGGCTAAGAAAGCCAGAGACTTCTTGCCTTTCCTGCACCGAAGTAGA