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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTTCGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGTCTTGGTATACCAAATACTAAGAATTTCAACGAAATCACATCAATTGAGgtatgcgtattatttgtttcattcccttgctgctaatcagtctgtagcatattccctagtataatatagattacttttgtcttctgagtatacatgtgta...

Basic information

species Glycine max
transcript GLYMA06G13290.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13290.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os03g50850.1 (Oryza sativa), 5'ss of exon 11
GGCTTTCGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGTCTTGGTATACCAAATACTAAGAATTTCAACGAAATCACATCAATTGAGgtatgcgtattatttgtttcattcccttg-ctgctaatcagtctgtagcatattccct--agtataatatagattacttttgtcttctgagtatacatgtgta-----------------------------------------------------------------------------------------------
|||||  || || ||||| || || ||||||||||| || |||||||| |||||||| || || ||||||||||| ||||| ||||||||||| ||  |||||         ||| |   |         |  || |  ||  |      |  || |   | | | | | | || | |  | |  |     |   ||| |                                                                                                  
GGCTTATGAGCGGCATTTCAAGGAGTGGCGCCATCAGCACGGGATGCGCTGTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatcactttatgctacctgtacatccactgaatagcttaatttgttctctcagaaatttgagagaaatgagtactttgcttaatcttcccatattggctgtttttatacatgttctcagaaattactgttgctgcgaatgtggtaaattggtaatggaaggggcaattgacacctcttatttctgttttcag

upper sequence: GLYMA06G13290.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G178227_T01 (Zea mays), 5'ss of exon 11
GGCTTTCGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGTCTTGGTATACCAAATACTAAGAATTTCAACGAAATCACATCAATTGAGgtatgcgtattatttgtttcattcccttgctgctaatcagtctgta-gcatatt---ccctagtataatata--gattacttttgtcttctgagtatacatgtgta
|||||  || || ||||| || |||||||| ||||| ||||||||||| || ||||| || || ||||||||||||||||| ||||| ||||| || |||||||    ||   |||||| |||    |  |  || | | |  |||  | ||||    | |||  || || |  | ||| ||   | ||   |||||| ||     
GGCTTATGAGCGTCATTTCAAGGAATGGCGTCATCAGCATGGGATGCGATGCCTTGGCATTCCCAATACTAAGAATTTCAATGAAATTACATCCATCGAGgtatat-catctcttgttttattgatattattttatttacttggtatacttattggtgcatagcttactacaatgtttatttactttttactagtata-ata----

upper sequence: GLYMA06G13290.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G06160.1 (Arabidopsis thaliana), 5'ss of exon 10
GGCTTTCGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGTCTTGGTATACCAAATACTAAGAATTTCAACGAAATCACATCAATTGAGgtatgcgtattatttgtttcattcccttgctgctaatcagtctgtagcatattccctagtataatatagattacttttgtcttctgagtatacatgtgta
|||||| ||  ||||||||||||||||||| || ||||| || ||||| || || || || ||||| || ||||| |||||||||||||| || |||||||||    ||| || || |  |   | ||| | |   | |    |||| | ||    | ||| | |  |  ||  | |||| |  |  || |         
GGCTTTTGAGAGACATTTTAAAGAATGGCGACACCAACACGGAATGCGTTGCCTAGGAATCCCAAACACAAAGAACTTCAACGAAATCACTTCGATTGAGgtaataatataatatgatcaaagactttg-tacagcttaaa--gtagtaaatagtttggta-atttgatcttgttgttgtttggtttgtttcag------

upper sequence: GLYMA06G13290.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv16s0098g00320.t01 (Vitis vinifera), 5'ss of exon 11
GGCTTTCGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGTCTTGGTATACCAAATACTAAGAATTTCAACGAAATCACATCAATTGAGgtatgcgtattatttgtttcattcccttgctgctaatcagtctgtagcatattccctagtataatatagattacttttgtcttctgagtatacatgtgta-------
|||||| || || |||||||| |||||||||||||| ||||| ||||| || || || || || ||||| || || ||||| ||||||||||||||| |||||||| | |||| || |  || |  |  ||  || | ||  |   | |  ||  |||||  |||  |    ||||  |   | ||  |   | || | |       
GGCTTTTGAGCGGCATTTTAAGGAATGGCGCCATCAGCATGGTATGCGTTGCCTCGGCATTCCCAATACCAAAAACTTCAATGAAATCACATCAATTAAGgtatgc-tcttatctgat--atcctttgcctaatacttaggttt--gtaagttggctagtccaatgcacccaactt--ggggtttggattggcgtgaggatgttata

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304679|gb|FG994957.1|FG994957
EST:     GTCTTGGTATACCAAATACTAAGAATTTCAACGAAATCACATCAATTGAG                         GAAGCAAAGGAACTTTGGAAGAAGATACAGCAAAGACAAG-AGTGAACAAG
genomic: GTCTTGGTATACCAAATACTAAGAATTTCAACGAAATCACATCAATTGAGgtatgcgtat ... tctgttgcagGAAGCAAAGGAACTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAG