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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAACTACTGGGCTATTGTAGAGAGGACACTCCATTTACAAGGATGTTGGTTTTTGATTATGCTTCAAATGGGACACTTCATGATCACTTACATTGTTgtaagtcaagtttctcagctcgtgtgtatgttttaagtgtttcagttccttcaacatgcaattatgactgcag

Basic information

species Glycine max
transcript GLYMA01G42770.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G42770.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv02s0025g03700.t01 (Vitis vinifera), 5'ss of exon 10
---GGAAAACTACTGGGCTATTGTAGAGAGGACACTCCATTTACAAGGATGTTGGTTTTTGATTATGCTTCAAATGGGACACTTCATGATCACTTACATTGTTgtaagtcaagtttctcagct----cgtgtgtatgttttaa-gtgtttcagttccttcaacatgcaattatgactgcag------
   |||||| |||||||||||||| |||||  | ||||||||||||| ||| |||||||||| ||||| || ||||| || ||  |||| ||| | |||||   |||||  || ||||   ||    |   ||| ||  | || ||| ||||||   |  ||  ||    |||   |  |       
ACAGGAAAATTACTGGGCTATTGTCGAGAGAGCTCTCCATTTACAAGAATGCTGGTTTTTGAATATGCATCGAATGGAACGCTCTATGAGCACCTTCATTg---taagttgagcttcttttctgtaacagctgtttgcatcaatgtgcttcagtagatgaaatttgagcctattcatttaaatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11688698|gb|BF596374.1|BF596374
EST:     GGTTATTGATTATGCTTCAAATGGGACACTTCATGATCACTTACATTGTT                         ATGAAGAATGATGTCAATACTCTTGGACACGGCGTATGAAGATT
genomic: GGTTTTTGATTATGCTTCAAATGGGACACTTCATGATCACTTACATTGTTgtaagtcaag ... atgactgcagATGAAGAAGGATGTCAATTCTCTTGGACACGGCGTATGAAGATT
EST: gi|8284291|gb|BE021850.1|BE021850
EST:     GGTTTTTGATTATGCTTCAAATGGGACACTTCATGATCACTTACATTGTT                         ATGAAGAAGGATGTCAATTCTCTTGGACACGGCGTATGAAGATTGCCATAG
genomic: GGTTTTTGATTATGCTTCAAATGGGACACTTCATGATCACTTACATTGTTgtaagtcaag ... atgactgcagATGAAGAAGGATGTCAATTCTCTTGGACACGGCGTATGAAGATTGCCATAG
EST: gi|19269154|gb|BM885410.1|BM885410
EST:     GGTTTTTGATTATGCTTCAAATGGGACACTTCATGATCACTTACATTGTT                         ATGAAGAAGGATGTCAATTCTCTTGGACACGGCGTATGAAGATTGCCATAG
genomic: GGTTTTTGATTATGCTTCAAATGGGACACTTCATGATCACTTACATTGTTgtaagtcaag ... atgactgcagATGAAGAAGGATGTCAATTCTCTTGGACACGGCGTATGAAGATTGCCATAG