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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGTAACTTTGTTATCCATGGCTCAGATTgtaagcagtcttttatttgcattgcagtgtttagtttggtcttgatgtatcatataaattttttatgtgaaataagagaaaatctatttttggcctttccagcag

Basic information

species Glycine max
transcript GLYMA01G37380.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G37380.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os06g49990.3 (Oryza sativa), 5'ss of exon 11
ACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGTAACTTTGTTATCCATGGCTCAGATTgtaagcagt-cttttatttgcattgcagtgtttagtttggtcttgatgtatcatataaattttttatgtgaaataagagaaaatctatttttggcctttccagcag
|| ||||  || ||||||||||| |||||||| ||||||||||||||| | ||||||||||| || || |||||||||||||||||| |||   | ||  ||  | | | |||    | | |||    ||||  |      |    |  ||| ||| || | | | | |  |  |                               
ACACACAGGATAAAGAAGTTTGTTTTACACACAAACTTCCCTGGTCATTCAGATTTCAATTCCTATATGAAGTGTAACTTTGTTATCTATGATGCCGAAGgtctgaactacttgctgtagaattagtttgttgtgaagaaaccaactacatcctattaactatatgtcttgatcag------------------------------

upper sequence: GLYMA01G37380.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G51130.1 (Arabidopsis thaliana), 5'ss of exon 11
ACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGTAACTTTGTTATCCATGGCTCAGATTg--taagcagtcttttatttgcattgcagtgtttagtttggtcttgatgtatcatataaattttttatgtgaaataagagaaaatctatttttggcctttccagcag
||||||||| | || ||||||||  | ||||||||||  || ||||||||||||||||| || ||||| ||||| |||||||| ||    ||  |  | |   || | ||    | || |   |     | || | |     || ||| |||  | |  ||||||       || ||    |    |   | |  | ||||      
ACTCACAAAGTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATGCTGATTTCAACTCATACATAAAGTGCAACTTTGTGATTTCGGgtacgtaatacttatgaagcagctcatgtcagtcaatatattcaata----ctcgatatatgttgtctatttttcc-----aacaaacctacgctttcatgtcacttttcag----

upper sequence: GLYMA01G37380.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv04s0023g02970.t01 (Vitis vinifera), 5'ss of exon 11
ACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGTAACTTTGTTATCCATGGCTCAGATTgtaagcagtcttttatttgcattgcagtgtttagtttggtcttgatgtatcatataaattttttatgtgaaataagagaaaatctatttttggcctttccagcag--
||||| ||||||||||| ||||| || ||||| ||||  ||||| ||||| ||||| ||||| ||||| || || |||||||||||| |||| || |||||||||     || | ||| ||||           |||  ||      | ||| ||||| ||| |              |  || |||||||    | |     |   
ACTCATAAAATCAAGAAATTTGTCTTGCACACAAACTATCCTGGGCATGCAGATTTTAATTCATACATGAAATGCAACTTTGTTATCTATGGTTCTGATTgtaag-----ttctgttttcatt-----------tttaatc-----atttcacataaagtttgtcaacagggctgataattatttatttttattttcttgcatatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18730265|gb|BM525779.1|BM525779
EST:     TGATTTCAATTCTTACATTAAGTGTAACTTTGTTATCCATGGCTCAGATT                         TAGGGGGATCTTTCCAGGAAGTAAATAATAGCAAACAGAGGGTTATTACAC
genomic: TGATTTCAATTCTTACATTAAGTGTAACTTTGTTATCCATGGCTCAGATTgtaagcagtc ... tttccagcagTAGGGGGATCTTTCCAGGAAGTAAATAATAGCAAACAGAGGGTTATTACAC