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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGACTCTAGTTCGAGTTACAGTGTGGTGCATTGGGGAGTATGGTGACATGTTAGTTAATAATGTTGGAATGCTTGACATAGAAGATCCAATAACAgtgagtgctactgcttgaaaagtttatacatttgtctaaactgttgcttcaagtttcatgaatatgatatatcatttgaccacaggcaataatttaacaa...

Basic information

species Glycine max
transcript GLYMA01G03890.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03890.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os06g07090.1 (Oryza sativa), 5'ss of exon 11
GAGACTCTAGTTCGAGTTACAGTGTGGTGCATTGGGGAGTATGGTGACATGTTAGTTAATAATGTTGGAATGCTTGACATAGAAGATCCAATAACAgtgagt-gctactgcttgaaaagtttatacatttgtctaaactgttgcttcaagtttcatgaatatgatatatcatttgaccacaggcaataatttaacaa---
|| | | | ||| | ||  | || ||||||||||| ||||||||||| ||| | || || |||||||| ||||| |||||||| || ||||| || ||||||    | | ||||  |   || | |||| | ||  |   ||    ||||      | ||   ||  | ||||  ||  |||    |  |    ||    
GAAAGTTTGGTTAGGGTAGCTGTATGGTGCATTGGTGAGTATGGTGAAATGCTGGTGAACAATGTTGGTATGCTGGACATAGAGGAACCAATCACGgtgagttaacaattcttgccaccattct-cattgg-ctgcatgcttctgccaagaagtcaggatgcaattaaacatt--actgcagttcttgttcaggcatgtg

upper sequence: GLYMA01G03890.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G60070.2 (Arabidopsis thaliana), 5'ss of exon 11
GAGACTCTAGTTCGAGTTACAGTGTGGTGCATTGGGGAGTATGGTGACATGTTAGTTAATAATGTTGGAATGCTTGACATAGAAGATCCAATAACAgtgagtgctactgcttgaaaagtttatacatttgtctaaactgttgcttcaagtttcatgaatatgatatatcatttgacc-acaggcaataatttaacaa
|| ||||| || || ||| || | |||||||| || || |||| |||  |||| ||||| |||| ||||||||||||| |||||||||||||||| || ||| |||         |           ||||    |||| | ||  | ||   ||      ||| | |   || |    |      |  | |   ||
GAAACTCTTGTGCGCGTTGCAATATGGTGCATAGGAGAATATGCTGATCTGTTGGTTAACAATGCTGGAATGCTTGACTTAGAAGATCCAATAACGgtaagtactatcatcctgcactcagggtttattgttgtgactggtactggaggtgcaatttg-gggatctctttcttaatttgctttttttggtcttgtaa

upper sequence: GLYMA01G03890.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv01s0026g00310.t01 (Vitis vinifera), 5'ss of exon 11
GAGACTCTAGTTCGAGTTACAGTGTGGTGCATTGGGGAGTATGGTGACATGTTAGTTAATAATGTTGGAATGCTTGACATAGAAGATCCAATAACAgtgagtgctactgct----tgaaaagtttatacatttgtctaaactgttgcttcaagtttcatgaatatgatatatcattt-gaccacaggcaataatttaacaa
||    || || |||||  | || ||||||||||| || |||||||| |||||||| |||||||||||||||||||| ||||| || || ||||| |||||| |  || ||    |  |  ||| |     || | ||||    | |  ||   | | || | ||  ||||  |||| ||  |   |||   | |      
GAATGCCTTGTACGAGTGGCGGTCTGGTGCATTGGAGAATATGGTGAAATGTTAGTCAATAATGTTGGAATGCTTGATATAGAGGAACCTATAACTgtgagttcaccttctattttctatggttcagtttcttttgtaaatgtctacaacagaatgc-tggaaatattataaaattttgagaatgtgcatgcactat----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209707485|gb|BW664944.1|BW664944
EST:     ACATGTTAGTTAATAATGTTGGAATGCTTGACATAGAAGATCCAATAACA                         GTGACTGAGTTCGATGCAGTTGATGTCGTAGAGATTGCTATAAAACGCCAT
genomic: ACATGTTAGTTAATAATGTTGGAATGCTTGACATAGAAGATCCAATAACAgtgagtgcta ... atgctaacagGTGACTGAGTTCGATGCAGTTGATGTCGTAGAGATTGCTATAAAACGCCAT
EST: gi|213606433|gb|DB962998.1|DB962998
EST:     ACATGTTAGTTAATAATGTTGGAATGCTTGACATAGAAGATCCAATAACA                         GTGACTGAGTTCGATGCAGTTGATGTCGTAGAGATTGCTATAAAACGCCAT
genomic: ACATGTTAGTTAATAATGTTGGAATGCTTGACATAGAAGATCCAATAACAgtgagtgcta ... atgctaacagGTGACTGAGTTCGATGCAGTTGATGTCGTAGAGATTGCTATAAAACGCCAT
EST: gi|17518713|gb|BM187755.1|BM187755
EST:     GTTGGAATGCTTGACATAGAAGATCCAATAACA                         GTGACTGAGTTCGATGCAGTTGATGTCGTAGAGATTGCTATAAAACGCCAT
genomic: GTTGGAATGCTTGACATAGAAGATCCAATAACAgtgagtgcta ... atgctaacagGTGACTGAGTTCGATGCAGTTGATGTCGTAGAGATTGCTATAAAACGCCAT