Sequence
atgc intronic sequence ATGC exonic sequenceATGTGTTTTAATGCATTTGATAAAAATGCGAACCTTGATGTTTTGGATCATCCTATTCTAAACTTCATATATTACCTGgtaagatgtttgtgttccttcccttattttggtacttatattgccatactccttactgtttcttttaaattattggtatggtagaagaccatttttatat...
Basic information
species | Glycine max |
transcript | GLYMA20G01360.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G01360.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G02180.1 (Arabidopsis thaliana), 5'ss of exon 10
ATGTGTTTTAATGCATTTGATAAAAATGCGAACCTTGATGTTTTGGATCATCCTATTCTAAACTTCATATATTACCTGgtaagatgtttgt--gttccttcccttattttggt-acttatattgccatactccttactgtttcttttaaattattggtatggtagaagaccatttttatat
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ATGTGCTTTGCTGCTTTCGATGAGGGGGCAAACCTTGATGTGTTAGATCACCCCATCCTTAACTTCATATATTACCTGgtaacctctctcttagcttaatcatagaatctgatcatgaacattagcttaatatatgtaacctgatttcgttacttg--attacag----------------
upper sequence: GLYMA20G01360.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G14530.2 (Arabidopsis thaliana), 5'ss of exon 10
ATGTGTTTTAATGCATTTGATAAAAATGCGAACCTTGATGTTTTGGATCATCCTATTCTAAACTTCATATATTACCTGgtaagatgtttgtgttccttccc-----ttattttggtacttatattgccatactccttactgtttcttttaaattattggtatggtagaagaccatttttatat-----------------------------------
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ATGTGCTTTGATGCGTTTGACGATGCAGCAGATCTTGATGTCTTAGATCATCCAATCCTAAACTTCATATATTACTTGgtaagctttccattcacctcttcagctaccatatatgtgcatgtgtatatagacacacta-tgtgaatcttagaatctaaatatg----aagcttcttttaaaaatctctaaacaaaaagtgtgttctgtttacttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213610764|gb|DB974855.1|DB974855EST: GAA-CTATGATGTTTTGGATCATACTATTCTAAACTTCATATATTACCTG CTGAAT-GAAATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCT
genomic: GAACCT-TGATGTTTTGGATCATCCTATTCTAAACTTCATATATTACCTGgtaagatgtt ... cttgctgcagGTG-GTGGAAATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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ATGTGTTTTAATGCATTTGATAAAAATGCGAACCTTGATGTTTTGGATCATCCTATTCTAAACTTCATATATTACCTGgtaagatgtttgtgttccttcccttattttggtacttatattgccatactccttactgtttcttttaaattattggtatggtagaagaccatttttatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttccc