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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCAGCATAAACGGAGACTAGATGACACAACAAATGAACCTTTATTCACAAATGTAACTAGAGATTTTATTGGCTCTCTTGATTACATATTTTACACAGgtgtgatatcttgcaatgttatgtcattaatttgaataatttaacatcctgatcacttgtttatgaagtgatatcttgtgttttcag

Basic information

species Glycine max
transcript GLYMA19G39210.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39210.3 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G043509_T01 (Zea mays), 5'ss of exon 10
GAGCAGCATAAACGGAGACTAGATGACACAACAAATGAACCTTTATTCACAAATGTAACTAGAGATTTTATTGGCTCTCTTGATTACATATTTTACACAGgtgtgatatcttgcaatgttatgtc--attaatttgaataatttaacatcctgatcacttgtttatgaagtgatatcttgtg-ttttcag------------
||||| ||     | ||   |||     |||||||||||||  | |||||||||   || |||||||||| |||  || ||||||||||||||||||||||| || |  | || |   | |   |       ||||   |   |      |  | ||    | ||  |    |||  |     || |||             
GAGCATCAGCGGAGAAGGACAGACCCTGCAACAAATGAACCACTCTTCACAAATTGCACAAGAGATTTTACTGGAACTGTTGATTACATATTTTACACAGgt-tggtg-catggagcctcactgcgggcctgtttggccacaatgtttatcaaaccatggttatacaatactatacttcacaattgtcatgacaataccata

upper sequence: GLYMA19G39210.3 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G118467_T01 (Zea mays), 5'ss of exon 10
GAGCAGCATAAACGGAGACTAGATGACACAACAAATGAACCTTTATTCACAAATGTAACTAGAGATTTTATTGGCTCTCTTGATTACATATTTTACACAGgt------gtgatatcttgcaatgttatgtcattaatttgaataat---ttaaca--tcctgatcacttgttt--atgaagtgatatcttgtgttttcag------------------------------
  | ||||| | |||||   |||     |||||||||||||  | |||||||||   || |||||||||| |||  || |||||||||||||||||||||||       ||    ||  |      |     |  | || |||  |   ||  ||  | |||   | |  |||   |  | | | ||  ||  | |||                                
TTGGAGCATCAGCGGAGGACAGACCCTGCAACAAATGAACCACTCTTCACAAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAGgttggtgcatggagactcacccacgcacacagtagactttaattctatgtttgcagcttctgtatattcattttcctctaataagattgtgcttattcttttgatgatggcgatgtttgttctctttcag

upper sequence: GLYMA19G39210.3 (Glycine max), 5'ss of exon 10
lower sequence: Vv08s0007g07020.t01 (Vitis vinifera), 5'ss of exon 10
GAGCAGCATAAACGGAGACTAGATGACACAACAAATGAACCTTTATTCACAAATGTAACTAGAGATTTTATTGGCTCTCTTGATTACATATTTTACACAGgtg--------------tgatatcttgcaatgttatgtcat---taatttgaata-atttaacatcctgatcacttgtttatgaagtgatatcttgtgttttcag-----------------------
||||| || |   | ||  | ||   | ||||||||||||||||||| ||| ||   |||||||||||||||||| | ||||||||||||||||| ||||||               ||     |||||   || |   ||   | ||||  | |  |    ||| ||  |   ||||      | |||| | | |  || ||                         
GAGCAACAGAGGAGAAGGTTGGACCCCTCAACAAATGAACCTTTATTTACACATTGCACTAGAGATTTTATTGGCACCCTTGATTACATATTTTATACAGgtaatctttttcctacatgtcggtttgcatctttttcctatattttatttacacatgtgcttcatacttgtagtttgtgccgttattgatgtttaggattctctaataaataagatttgtggttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9898661|gb|BE607629.1|BE607629
EST:     AAATGTAACTAGAGATTTTATTGGCTCTCTTGATTACATATTTTACACAG                         CGGATTCATTGGTTGTGGAGTCATTGCTGGAGTTATTGGATGAGGAAAGTT
genomic: AAATGTAACTAGAGATTTTATTGGCTCTCTTGATTACATATTTTACACAGgtgtgatatc ... gtgttttcagCGGATTCATTGGTTGTGGAGTCATTGCTGGAGTTATTGGATGAGGAAAGTT
EST: gi|18732588|gb|BM527126.1|BM527126
EST:     AAATGTAACTAGAGATTTTATTGGCTCTCTTGATTACATATTTTACACAG                         CGGATTCATTGGTTGTGGAGTCATTGCTGGAGTTATTGGATGAGGAAAGTT
genomic: AAATGTAACTAGAGATTTTATTGGCTCTCTTGATTACATATTTTACACAGgtgtgatatc ... gtgttttcagCGGATTCATTGGTTGTGGAGTCATTGCTGGAGTTATTGGATGAGGAAAGTT