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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGTCTTgtatgtaatccagttgcatgactttgacataccttgttcttattttctttttacctttctaatctcttctgttgatgccag

Basic information

species Glycine max
transcript GLYMA17G34380.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34380.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 9
TGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGTCTTgtatgta------atccagttg----catgactttgacataccttgttcttattttctttttacctttctaatctcttctgttgatgccag
|||||| |||||||| ||  |||| || |  |||||| |||| || ||||| ||||||||||||||||||||||| ||       | |||||      ||   | |||| ||   ||   |||  ||    || |   || |  | |||  | |  |||  ||
TGATGTAAGAAACAACAGTTTGACTGGCACCATTCCACAGAATATTGGCAACTGTACTGCCTTCCAGGTCTTgtacgtgcttcttacccagtgaaggccaaatcgttgaaatctgttaa-cttggttataattcagaattgttttttctcttttgaatggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193425113|gb|FK389436.1|FK389436
EST:     AGAACATAGGCAATTGTACTGCCTTCCAGGTCTT                         GGATTTATCCTACAACCAACTAACTGGAGAGATACCATTCAATATTGGATT
genomic: AGAACATAGGCAATTGTACTGCCTTCCAGGTCTTgtatgtaatc ... ttgatgccagGGATTTATCCTACAACCAACTAACTGGAGAGATACCATTCAATATTGGATT
EST: gi|208289923|gb|GE088931.1|GE088931
EST:     CAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGTACTT                         GGATTTATCCT
genomic: CAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGT-CTTgtatgtaatc ... ttgatgccagGGATTTATCCT
EST: gi|193327211|gb|FK291216.1|FK291216
EST:     ACAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGTCTT                         GGATTTATCCTACAACCAACTAACTGGAGAGATACCATTCAATATTGGATT
genomic: ACAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGTCTTgtatgtaatc ... ttgatgccagGGATTTATCCTACAACCAACTAACTGGAGAGATACCATTCAATATTGGATT
EST: gi|208294800|gb|GE094773.1|GE094773
EST:     ACAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGTCTT                         GGATTTATCCTACAACCAACTAACTGGAGAGATACCATTCAATATT
genomic: ACAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGTCTTgtatgtaatc ... ttgatgccagGGATTTATCCTACAACCAACTAACTGGAGAGATACCATTCAATATT