1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGGGGATACCTGACATGCGCTTACCGCTCCTTTATACATTATCTTGGCCAGAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAgtacaaacaatttcccctgtatcatgttttctttagttcaaaaatggattactttattgagagacaaaaggaataattaaacacttttcaaatgcacaac...
species | Glycine max |
transcript | GLYMA16G10880.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAA GTATGGCTCTCTAACATTTTATGCACCCGGATGACEST: gi|9258778|gb|BE346925.1|BE346925
genomic: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAgtacaaacaa ... cttcactcagGTATGGTTCTCTAACATTTTATGCACC-GGATGAC
EST: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAA GTATGGTTCTCTAACATTNTATGCACCGGATGACAAGAAGTTTCCATCGGTEST: gi|5606958|gb|AI901056.1|AI901056
genomic: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAgtacaaacaa ... cttcactcagGTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGT
EST: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTACCAA GTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGTEST: gi|17962913|gb|BM269669.1|BM269669
genomic: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAgtacaaacaa ... cttcactcagGTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGT
EST: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAA GTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGTEST: gi|15288120|gb|BI472011.1|BI472011
genomic: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAgtacaaacaa ... cttcactcagGTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGT
EST: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAA GTATGGTTCTCTAACAEST: gi|9204784|gb|BE331008.1|BE331008
genomic: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAgtacaaacaa ... cttcactcagGTATGGTTCTCTAACA
EST: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAA GTATGGTGCTCTAACATTATATGCACCGGATGACAAGAAGTTTCCATCGGTEST: gi|20811436|gb|BQ295914.1|BQ295914
genomic: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAgtacaaacaa ... cttcactcagGTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGT
EST: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAA GTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGT
genomic: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAgtacaaacaa ... cttcactcagGTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGGATACCTGACATGCGCTTACCGCTCCTTTATACATTATCTTGGCCAGAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAgtacaaacaatttcccctgtatcatgttttctttagttcaaaaatggattactttattgagagacaaaaggaataattaaacacttttcaaatgcacaac
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG