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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGCTCCAAATCCTTGAAGGTTGCCTGTAATTTAAACAATGCAGCATGCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAGgtatggctgatgtatcccatcttatggttatagaaaaaagcacttcatgtgtttacaagcgaaaactgattcttaatgtggacaagcag

Basic information

species Glycine max
transcript GLYMA16G10730.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209706891|gb|BW661501.1|BW661501
EST:     GCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCAG
genomic: GCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAGgtatggctga ... ggacaagcagGTACTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCAG
EST: gi|21255768|gb|BQ452656.1|BQ452656
EST:     GCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCAG
genomic: GCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAGgtatggctga ... ggacaagcagGTACTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCAG
EST: gi|8827067|gb|BE210797.1|BE210797
EST:     GCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCAG
genomic: GCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAGgtatggctga ... ggacaagcagGTACTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCAG
EST: gi|8827032|gb|BE210762.1|BE210762
EST:     GCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCAG
genomic: GCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAGgtatggctga ... ggacaagcagGTACTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCAG
EST: gi|7284778|gb|AW597328.1|AW597328
EST:     GCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCAG
genomic: GCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAGgtatggctga ... ggacaagcagGTACTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCAG
EST: gi|26059121|gb|CA802035.1|CA802035
EST:     TTGTGCACAAAG                         GTACCT-TACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCA
genomic: TTGTGCACAAAGgtatggctga ... ggacaagcagGTA-CTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCA
EST: gi|7284769|gb|AW597319.1|AW597319
EST:     GCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCAG
genomic: GCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAGgtatggctga ... ggacaagcagGTACTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCAG
EST: gi|58020765|gb|CX707507.1|CX707507
EST:     GCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCAG
genomic: GCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAGgtatggctga ... ggacaagcagGTACTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCAG
EST: gi|192317653|gb|FK011331.1|FK011331
EST:     GCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCAG
genomic: GCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAGgtatggctga ... ggacaagcagGTACTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCAG
EST: gi|10255841|gb|BE823607.1|BE823607
EST:     GCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCAG
genomic: GCAAGTTAAAATTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAGgtatggctga ... ggacaagcagGTACTGGACCTTGAGAGTACTAACGTGAAGGCTCTTTATAGACGGACCCAG