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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGGGAATCCCTTGGAGAAGGGGACTCTAGTTGGGCCCTTGCATACTCCTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttcatttcactattttctagttatgttaaatatttaggggatgtaaccttccatttcatatctgtaattttgctcagtaagatatgcaggcttttgctcatacatatacaatggattggatgcttgtattctgtgtagagataatttacttgatactctgattatcag

Basic information

species Glycine max
transcript GLYMA15G19670.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19054093|gb|BM732760.1|BM732760
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|16346239|gb|BI971834.1|BI971834
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|254316181|gb|GR827718.1|GR827718
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|9259222|gb|BE347430.1|BE347430
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|193511086|gb|FK468971.1|FK468971
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|8827562|gb|BE211292.1|BE211292
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|20448705|gb|BQ252829.1|BQ252829
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|254334456|gb|GR844241.1|GR844241
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         G-AGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|193615341|gb|FK564765.1|FK564765
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|193472436|gb|FK438643.1|FK438643
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|5677082|gb|AI938212.1|AI938212
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|254315874|gb|GR825683.1|GR825683
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCAT-AAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|254316180|gb|GR827717.1|GR827717
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|10255898|gb|BE823664.1|BE823664
EST:     CTTTCAGAAGGGTATTTCAGTCATAAAANCTCAG                         GGAGGGAAGATNNTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|19936658|gb|BQ080961.1|BQ080961
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|192309267|gb|FG999144.1|FG999144
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|12773669|gb|BG238596.1|BG238596
EST:     TTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: TTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|208314647|gb|GE112191.1|GE112191
EST:     TACTTCAGTGGAAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: TACTTCAGTGG-AAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|192309268|gb|FG999145.1|FG999145
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|193335148|gb|FK297944.1|FK297944
EST:     TGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCT
genomic: TGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCT
EST: gi|20812239|gb|BQ296717.1|BQ296717
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|9259105|gb|BE347252.1|BE347252
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|298186164|gb|HO036797.1|HO036797
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|15813675|gb|BI785950.1|BI785950
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|19934585|gb|BQ079615.1|BQ079615
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|207753779|gb|GD722341.1|GD722341
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|193487181|gb|FK450902.1|FK450902
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATTGGGAATCCCTTGGAGAAGGGGACTCTAGTTGGGCCCTTGCATACTCCTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttcatttcactattttctagttatgttaaatatttaggggatgtaaccttccatttcatatctgtaattttgctcagtaagatatgcaggcttttgctcatacatatacaatggattggatgcttgtattctgtgtagagataatttacttgatactctgattatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA